Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq122 214 2e-50 seq546 136 4e-27 seq572 95.1 1e-14 seq509 87.8 2e-12 >seq122 Length=40810 Score = 214 bits (236), Expect = 2e-50 Identities = 610/925 (66%), Gaps = 31/925 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||||||||| | || || | || ||||| | ||||| || | |||| Sbjct 15387 GAAGAACCACTTTTAAAGGAAAACAAGAGAAGGTTTGTTCTCTTTCCAATCAAGTATCAC 15328 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | |||||||| |||||||||||||| || ||||| | || ||| | || Sbjct 15327 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 15268 Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 || || || ||| || |||||| || | || ||| ||| ||| || ||| Sbjct 15267 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 15208 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 | || | ||||| || || || || |||||||| || || || ||||| || | Sbjct 15207 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTG-- 15150 Query 57744 AGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 ||| |||| ||| || || ||| | | ||||| | ||| || || || || ||| | Sbjct 15149 AGAATTTCTCAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 15090 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA-- 57859 || |||||| | ||||| |||| ||||| || | || ||||| ||| | || || Sbjct 15089 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 15030 Query 57860 CAACGACGAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 ||| | || || | | | | ||||| || || |||||||| || ||| | | Sbjct 15029 CAA--AGGA-AAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAA 14973 Query 57919 AGGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 |||| || ||| | | |||||||| | |||| || ||| || ||||| Sbjct 14972 AGGCCGAATGGGCCTTAAAATGGATTGCAGATAAAG-----ATGCGTTGTTTGCAGAGAG 14918 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 | | | || || || || || |||||||| ||||| || || ||||| | || || Sbjct 14917 GTTGGTGGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTT 14858 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| |||| || | || ||||||| || ||||||| ||||||| |||| | | Sbjct 14857 CTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAG 14798 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 || || ||| | ||||| |||||||| || | | | | ||||||| | | ||| Sbjct 14797 AGATGAAGGTTTACATACCGATTTTGCTTGTTTGCTCT--TTTCACATTTGAACCATACC 14740 Query 58154 GACGCGGGATCGCATCTTGGAC--ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | | | | ||| || || ||||| || || | || ||||| | | Sbjct 14739 CCAGACGAAAAAATTGTCAGACAAATCATTACCGAAGCCGTTGATATTGAAAAGAAATAC 14680 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 |||| || |||||||| || | ||||||||||||| || |||||||||| |||| Sbjct 14679 TTCACTGACGCCCTACCTGTCAACTTGCTCGGTATGAATAAGGATTTGATGTGTCAGTAT 14620 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT-GATTG-GAGAGCGTCATTACAACA 58329 | ||||||||||| || ||||| || | | | | | ||| || | || ||| || Sbjct 14619 GTCGAGTTTGTTGCAGATAGACTACTGATTGCATTAGGTTGTGAAAAGGT--ATACGACG 14562 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | |||||| || || |||||| | || || || | || || ||||||||||||| Sbjct 14561 TTACAAATCCATTCGACTTTATGGAGAACATTTCCCTTGCTGGTAAAACAAACTTTTTCG 14502 Query 58390 aaaaaaaaGTTAGCGAATATCAAAA 58414 |||| | ||| ||| || ||||| Sbjct 14501 AAAAGAGAGTCTCCGACTACCAAAA 14477 >seq546 Length=22432 Score = 136 bits (150), Expect = 4e-27 Identities = 402/620 (65%), Gaps = 0/620 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| | | |||||| | ||| || ||||||| ||| ||| | || | || Sbjct 11948 TTCTCAACTCTTTCCATAAATAAATCAGGAATCCATAAAGCAGGGAATAAATCTCTTGCT 12007 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | | || ||||| ||| ||| || | | ||| | ||| || | | || | |||| Sbjct 12008 CTAATTTCTTCTTTACCGTGGTTTTTCCTGATATCAATAAAATCAAGAATATCTGAATGC 12067 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| | || | |||||||| || ||||| ||||| || || || || || || Sbjct 12068 CAAGGCTCAATATATAGTGCAAACGCACCAGGTCTTTTATTACCACCTTGGTCAACATAC 12127 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | || ||||| || | || || | ||| || | | || ||||| | || Sbjct 12128 CTTGCAGTGTTATTAAAGACCCTAATCATTGGAATAATCCCATTGGATGTACCATTAGTA 12187 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | | ||||| ||| || || || || | || || || || || || | Sbjct 12188 CCGGCAATATAAGAACCAGTTGATCTAATATTATGTATATGTAACCCAATACCACCAGCA 12247 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | ||| || |||| || |||| ||||| ||| || ||||| || || ||| || || Sbjct 12248 GTTTTGGAAATCAAAGCACATTCTTTCAAAGTATCATAGATACCTTCAATGGAATCGTCC 12307 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | || || |||||||| ||||||||||| | | || ||| | | ||| || Sbjct 12308 TTCATTGCAACTAAGAAACATGAAGACATTTGATTTCTTGGAGTACCCGAATTGAAAAGA 12367 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || || || || || || || | || ||||| | ||| || || || || | | | Sbjct 12368 GTTGGAGAAGCATGTGTGAAATACCTCTTTGACATCAAATTATAAGTTTCAATAACAGAA 12427 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 ||||| || || || || ||||| | ||| || | ||| || | | ||| || || ||| Sbjct 12428 TCAATATCATCACCATGAATACCAACGGCAACTCTCATTATTAAATGTTGGGGCCTTTCG 12487 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 | | || || ||| | || ||||| | || | ||||| || ||||||||| Sbjct 12488 GCAATCTTACCATTTATTCTTAAAAGATAACTCCTTTCTAATGTTTTGAAACCAAAATAG 12547 Query 23939 TCATAGTTAAAGTCACGATC 23958 | ||| || ||||| | ||| Sbjct 12548 TTATAATTGAAGTCTCTATC 12567 >seq572 Length=74374 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || ||||| | || || || || || ||| | || |||||| | Sbjct 55842 AAGATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCT 55783 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| || | || || |||||||| | || || ||| Sbjct 55782 TCTGACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGAC 55723 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || || || || || || || || ||||| || ||| | ||| || Sbjct 55722 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTAC 55663 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| || ||||| |||| | ||| |||| || |||| Sbjct 55662 AACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGTA 55611 >seq509 Length=17948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||| || || ||| | || || || || || ||| | || || || | Sbjct 2115 AAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCA 2056 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | ||| ||||||||||| | || || ||| Sbjct 2055 TCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGAC 1996 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || || || || || || || || ||||| || ||| || || || Sbjct 1995 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTAC 1936 Query 31370 AACATTCAAAAAGAATCGACTCTTCA 31395 ||||||||||| ||||| |||||||| Sbjct 1935 AACATTCAAAAGGAATCTACTCTTCA 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762672278480