Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq122 315 7e-81 >seq122 Length=40810 Score = 315 bits (348), Expect = 7e-81 Identities = 601/873 (69%), Gaps = 17/873 (2%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||| ||||| || ||||| |||||||| | || || || || |||||||| || ||| Sbjct 14492 ACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTCTCCATAAAGTCGAAT 14551 Query 13656 GGATTTATT--GACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 |||||| | | | || || |||| |||||||||| | | | |||| |||||| |||| Sbjct 14552 GGATTTGTAACGTCGTATAC-CTTT-TCACAACCTAATGCAATCAGTAGTCTATCTGCAA 14609 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 |||||| | ||| ||| |||| ||||| ||||||||| | | || ||||| | Sbjct 14610 CAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAGTTGACAGGTAGGG 14669 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | || || ||| ||||| ||| || || || | || || | | | ||| | Sbjct 14670 CGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAATGATTTGTCTGACAATTT 14729 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | || | || || | |||| ||| | ||||| |||||||| ||| | | Sbjct 14730 TTTCGTCTGGGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCAAAATCGGTATGTAAAC 14789 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 | |||||||||| ||| || ||||| || || || || ||||||||||| |||| |||| Sbjct 14790 CTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGCATCAAACCTCTCTTTT 14849 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || | |||||||| || || ||||| || || ||||| |||||||| | Sbjct 14850 TCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 14909 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || | ||| ||||| | || | ||| | | ||||||||| |||||||| | Sbjct 14910 CCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCCATTTTAAGGCCCATTCGG 14969 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC-CTTCTCTTTA 14132 |||| || ||| | ||||||||||| ||||| ||||| |||| ||| |||| Sbjct 14970 CCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATAAGAATTCACTTTCCTTTG 15029 Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 | ||| ||||| |||||||| | ||| ||| |||| || || ||||||||||| Sbjct 15030 GATCTT-TGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGAATGAATGTTTTCCATC 15088 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCT 14251 || || || ||||| || ||| |||| || | ||| || || | | |||| | Sbjct 15089 ATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAACATCACTTGAGAAAT-T 15147 Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14311 || | ||||||||||| |||||||||||| ||| ||||| || || | | || Sbjct 15148 CTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAGAACGCTAGAACTCTTGA 15207 Query 14312 AATAAAGTATTGCTCTTCATT---GTTGAGT---TTTTTCCAATCGGATAAATCCTTAGA 14365 ||| ||| || || |||||| ||| | | || |||||||| ||||| || || Sbjct 15208 AATGAAGAAT--CT-TTCATTTTCGTTCAATCTATTGTTCCAATCATGCAAATCTTTGGA 15264 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 ||||| | ||| || | ||||| ||| || | || || || |||||| ||| || Sbjct 15265 GAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTGTACATTTGCCAAAT 15324 Query 14426 TTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||| | ||| || ||||| | ||||| || Sbjct 15325 TTCGTGATACTTGATTGGAAAGAGAACAAACCT 15357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723988274600