Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq122 320 2e-82 >seq122 Length=40810 Score = 320 bits (354), Expect = 2e-82 Identities = 603/874 (69%), Gaps = 17/874 (2%) Strand=Plus/Plus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||| ||||| |||||||| |||||||| | || || || || |||||||| |||||| Sbjct 14492 ACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTCTCCATAAAGTCGAAT 14551 Query 13444 GGATTTGTT--GACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAA 13501 |||||||| | | || || |||| |||||||||| | | | | || |||||| |||| Sbjct 14552 GGATTTGTAACGTCGTATAC-CTTT-TCACAACCTAATGCAATCAGTAGTCTATCTGCAA 14609 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 |||||| | ||| ||| |||| ||||| ||||||||| | | || ||||| | Sbjct 14610 CAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAGTTGACAGGTAGGG 14669 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621 | ||| || ||| ||||| ||| || || ||| | || || | | ||| | Sbjct 14670 CGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAATGATTTGTCTGACAATTT 14729 Query 13622 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 | || | || || | |||| ||| | ||||| |||||||| ||| | | Sbjct 14730 TTTCGTCTGGGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCAAAATCGGTATGTAAAC 14789 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 | |||||||||| ||| || ||||| || || || || ||||||||||| |||| |||| Sbjct 14790 CTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGCATCAAACCTCTCTTTT 14849 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| || || | || ||||| || || ||||| || || ||||| |||||||| | Sbjct 14850 TCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 14909 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | | | ||| ||||| | || | ||| | || ||||||||| |||||||| | Sbjct 14910 CCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCCATTTTAAGGCCCATTCGG 14969 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC-CTTCTCTTTA 13920 |||| || ||| | |||||||| |||||||||||||| ||| ||| |||| Sbjct 14970 CCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATAAGAATTCACTTTCCTTTG 15029 Query 13921 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 | ||| ||||| |||||||| | ||| ||| |||| || || |||||||| || Sbjct 15030 GATCTT-TGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGAATGAATGTTTTCCATC 15088 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCT 14039 || || || ||||| |||||| |||| |||| ||| || || | | |||| | Sbjct 15089 ATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAACATCACTTGAGAAAT-T 15147 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTT 14099 || | || |||||||| || ||||||||| ||| ||||| || || | | || Sbjct 15148 CTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAGAACGCTAGAACTCTTGA 15207 Query 14100 AATAAAGTATTGCTCTTCATT---GTTGAGT---TTTTTCCAATCGGCTAAATCCTTAGA 14153 ||| ||| || || |||||| ||| | | || |||||||| ||||| || || Sbjct 15208 AATGAAGAAT--CT-TTCATTTTCGTTCAATCTATTGTTCCAATCATGCAAATCTTTGGA 15264 Query 14154 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 ||||| | ||| || | ||||| ||| || | || || || |||||| ||| || Sbjct 15265 GAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTGTACATTTGCCAAAT 15324 Query 14214 TTCTTTATATAATATAGGAAAAACTACAAATCTT 14247 ||| | ||| || ||||| | ||||| ||| Sbjct 15325 TTCGTGATACTTGATTGGAAAGAGAACAAACCTT 15358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584797801160