Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq122 325 3e-84 >seq122 Length=40810 Score = 325 bits (360), Expect = 3e-84 Identities = 614/892 (69%), Gaps = 21/892 (2%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||| ||||| ||||| |||||||||||||| || | | ||||| || Sbjct 14477 TTTTGGTAGTCGGAGACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTC 14536 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 |||||||| ||||| |||||| | ||| | |||| |||| ||| |||||| | | Sbjct 14537 TCCATAAAGTCGAATGGATTTGT--AACG-TCGTATACCTTTTCACAACCTAATGCAATC 14593 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | ||| || ||||||||||| | ||||| ||| ||||| ||||| || | Sbjct 14594 AGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGC 14653 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || || ||||| | || || || || | || ||||| |||||||| |||||| ||| Sbjct 14654 AAGTTGACAGGTAGGGCGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAATG 14713 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156 || | ||| | | || || ||| | || | ||| ||| | || ||| ||| Sbjct 14714 ATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCA 14773 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 ||||| || || ||||||||||||| || |||||||| || || || | ||| ||| Sbjct 14774 AAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGC 14833 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | |||| ||||| | ||| || || | ||||| ||||| || || || || ||| Sbjct 14834 ATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCT 14893 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCA 13335 ||||| || ||||| || | |||||| || || || || |||| ||| | ||||| Sbjct 14894 TCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTA-TCTGCAATCCA 14952 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 ||| |||||| | || |||| || | || || |||| ||||| || ||||| Sbjct 14953 TTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATAA 15012 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | ||||||| ||| || |||||||| |||||||| ||| |||| || Sbjct 15013 GAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGA 15072 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 |||||| ||||||||| |||||||| ||||| |||||| ||||||||| | ||||| Sbjct 15073 ATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAAC 15132 Query 13516 TTC---GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || ||| |||| | || |||| ||||| || ||||| || ||| ||||||||| Sbjct 15133 ATCACTTGAG--AAAT-TCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAA 15189 Query 13573 aaaaGCAAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACAA---CTTTAACCAA 13627 || || || | ||| ||| || | |||| ||||| ||| || |||| Sbjct 15190 GAACGCTAGAA--CTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTCCAA 15247 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 || | |||||||| || | ||| | ||||| | ||||| ||||| || | |||||| Sbjct 15248 TCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTC 15307 Query 13688 TTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTC 13739 || ||||| ||| || || | ||| || ||||| | ||| | |||| Sbjct 15308 TTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAAGAGAACAAACCTTC 15359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978886011938