Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq122 217 3e-51 seq509 140 7e-28 >seq122 Length=40810 Score = 217 bits (240), Expect = 3e-51 Identities = 431/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Minus Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729 ||||| |||||| | ||| || ||| || ||||| | |||||||| || || Sbjct 15384 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 15328 Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||| |||| | || ||||| ||||||| || ||| | ||| Sbjct 15327 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 15268 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 || || | || || |||||||| ||| | ||| | || |||||| || || Sbjct 15267 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 15208 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || |||| ||||| ||||| | | ||||||||| || || |||||| |||| ||| Sbjct 15207 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 15148 Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 || |||| |||| | || || ||||| || || | |||||| || || ||||| || Sbjct 15147 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 15090 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | || | |||| || |||||||| || | ||| Sbjct 15089 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 15030 Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 ||| | |||| || || ||| | | || ||| || ||| | | |||| Sbjct 15029 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAAAG 14971 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140 | |||||||| | |||||||| |||| | || || | ||| ||||| || Sbjct 14970 GCCGAATGGGCCTTAAAATGGATTGCAGATAAAGATGCGTTGTTTGCAGAGAGGTTGGTG 14911 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 14910 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 14851 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 || || ||||| | |||||||| || || ||||| ||||| |||| | || || ||| Sbjct 14850 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 14791 Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| ||| || |||||||| Sbjct 14790 GGTTTACATACCGATTTTGCTTGTTT 14765 >seq509 Length=17948 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 1886 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1945 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 1946 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 2005 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 2006 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 2065 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 2066 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 2115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151388530716652