Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq122 325 4e-84 seq667 87.8 2e-12 seq237 82.4 9e-11 >seq122 Length=40810 Score = 325 bits (360), Expect = 4e-84 Identities = 548/778 (70%), Gaps = 35/778 (4%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || |||||| || ||||| || | |||||| |||||||||| |||||| || || Sbjct 14593 CAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAG 14652 Query 92977 -AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 ||| | |||||||| ||||| || ||| | | || || || |||||||||| | | Sbjct 14653 CAAGTTG-ACAGGTAGGGCGTCAGTGAAGTATTTCTTTTCAATATCAACGGCTTCGGTAA 14711 Query 93036 AGATTTCTATTACTCTACTATTTGGT---GGTTTTTGTACGACATAATTGT----ACATT 93088 ||||| | | || | | ||| || || | | || | || ||| | | Sbjct 14712 TGATTTGTCTGACAAT--TTTTTCGTCTGGGGTATGGTTC-----AAATGTGAAAAGAGC 14764 Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || || ||||| ||||||||||||||||| |||| | |||| ||| ||| ||| || Sbjct 14765 AAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTC 14824 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 |||||||| | || |||| || || | ||| || || || ||||| |||||| || Sbjct 14825 AAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAG 14884 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CT 93267 || |||||||| || || ||||||||||| | | || ||||| || ||| || Sbjct 14885 AAAATACCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCT 14944 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||||||||| ||||| ||||| |||| ||| ||||| || | |||||| || || Sbjct 14945 GCA-ATCCATTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGC 15003 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || |||| | | || | || | | |||| ||||| ||||| || || | |||||| Sbjct 15004 ATTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATA 15063 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||| ||||| | || ||||| ||||||||| || ||||||||| |||| || | Sbjct 15064 AGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGG 15123 Query 93448 GATCTGCACTT--CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || || || | ||||||||| |||| || | ||||||||||||||||||||| || Sbjct 15124 AATTTGAACATCACTTGAGAAA--TTCTCAACTAAATTTTCATTGACTATACCATCAGAA 15181 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATG-----TTTCTCATCATC-TTTAAGC 93559 || ||||| || || || | || | | ||||| | | |||| || || || | Sbjct 15182 GCAGCAAAGAACGC---TAGA-ACTCT-TGAAATGAAGAATCTTTCATTTTCGTTCAATC 15236 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || | |||||| | |||||| || ||||| | ||| || ||||||| || |||| Sbjct 15237 TATTGTTCCAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATG 15296 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 ||||||| || |||||||| | ||| || || ||||| | |||||||| | ||||| Sbjct 15297 CTTCTGCCTTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAAGAGAACAAA 15354 >seq667 Length=16792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 16787 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 16728 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTG--GAATTTTT 126366 ||||||||||||| ||| ||||| | || ||| ||||| || Sbjct 16727 TTCGAACCCCACAGCTGTCAAATATTTTTTTGCTGAATTATT 16686 >seq237 Length=34901 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 16702 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 16643 Query 126328 TTCGAACCCCACACCTGACA 126347 ||||||||||||| ||| || Sbjct 16642 TTCGAACCCCACAGCTGTCA 16623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556856143251560