Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq122 279 8e-70 seq509 154 2e-32 seq572 127 3e-24 >seq122 Length=40810 Score = 279 bits (308), Expect = 8e-70 Identities = 599/885 (68%), Gaps = 26/885 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || |||| | || ||||| || ||||| || || | | || || Sbjct 14474 GCCTTTTGGTAGTCGGAGACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATG 14533 Query 17921 AAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATTTTTCTTGTATTAATTCGT 17978 | |||||| || |||||||| || || |||| ||||| |||| | Sbjct 14534 TTCTCCATAAAGTCGAATGGATTTGTAACGTCGTATACC--TTTTCACAACCTAATGCAA 14591 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 | || ||||||||| ||||| |||||||| || |||||||||| ||||||||| | Sbjct 14592 TCAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGA 14651 Query 18039 GTAGTCTGAAAGGTAGAGCATCAAT-AATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | | ||| |||||| || ||| | || | |||||| || || ||||| | || | Sbjct 14652 GCAAGTTGACAGGTAGGGCGTCAGTGAAGTATTTCTTT-TCAATATCAACGGCTTCGGTA 14710 Query 18098 ATTATGTTTATTACCCTAGATT----TTGGCAATTTATTAATTATGTGATTATAATATAA 18153 || || | | | || | || | || || | || |||||| | | | Sbjct 14711 ATGATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAA--ATGTGA-----AAAGAG 14763 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 ||||| |||||||| || ||||||||||||||||| | || | ||||| ||||| Sbjct 14764 CAAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGT 14823 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 || || ||||| | |||||| ||||| | ||| || || ||||| || || ||| || Sbjct 14824 CAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAA 14883 Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTG 18331 ||| ||||| ||||| ||| || || || | || || || ||||| | | || | | Sbjct 14884 GAAAATACCTTCAACAGCA-GCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTAT 14942 Query 18332 CT-CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 || || ||||||||| |||||||| | | ||||| || || | || || Sbjct 14943 CTGCA--ATCCATTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAAT 15000 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||||| || || || |||| || | |||||| || ||||| || || || ||||| Sbjct 15001 TGCATTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGA 15060 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||| |||| ||||| ||| ||||||| || || || | ||| || || ||||||| Sbjct 15061 ATAAGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTC 15120 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 ||| ||||| || || | || | || || ||||| ||||| |||||||| |||| Sbjct 15121 TGGAATTTGAACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGA 15180 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATT 18627 || || || || || | ||| | |||||| | ||||||| || || | ||| Sbjct 15181 AGCAGCAAAGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATT 15240 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 |||||| |||| | |||||| || ||||||| ||| |||| ||||| ||||||| ||| Sbjct 15241 GTTCCAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTC 15300 Query 18688 GGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 |||| |||||||||| |||| || | || | || ||||| Sbjct 15301 TGCCTTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAA 15345 >seq509 Length=17948 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||| |||||||| ||| ||||||| || ||||| || |||||||| ||||||||||| Sbjct 2116 TAAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTC 2057 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||| | ||| || || || |||||| ||||| || ||||| || || || || Sbjct 2056 ATCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGA 1997 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||| | || | ||| |||||||| | |||||| |||||||| || || || Sbjct 1996 CCAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTA 1937 Query 155999 TAATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || |||| | | || ||||| ||||| || ||||||||||| |||| Sbjct 1936 CAACAT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 1884 >seq572 Length=74374 Score = 127 bits (140), Expect = 3e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 55842 AAGATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCT 55783 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || || || || | || || |||||||| ||||| || || || || Sbjct 55782 TCTGACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGAC 55723 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | || | ||| |||||||| | |||||| ||||||||||| || || Sbjct 55722 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTAC 55663 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | ||||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 55662 A--ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGT 55612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865879720400