Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq509 152 1e-31 seq122 150 4e-31 seq572 141 2e-28 >seq509 Length=17948 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || ||||| || | ||||| || ||| || || || || |||| Sbjct 1885 ACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAG 1943 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| |||| || ||||| ||||| |||||||| | ||| ||||| ||||||| Sbjct 1944 ACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTG 2003 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| |||||| || ||||| |||| || || || || | Sbjct 2004 GAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGA 2063 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 |||||| ||||| || ||||||||||| ||||||| ||| || ||||| ||| Sbjct 2064 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 2116 >seq122 Length=40810 Score = 150 bits (166), Expect = 4e-31 Identities = 472/731 (65%), Gaps = 16/731 (2%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 || |||||| || ||||| || ||||| || |||| || || ||||||||| | || Sbjct 14596 TAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAA 14655 Query 49709 TTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatta 49767 || | |||| || ||| | || | ||||||| | || || || |||| |||| | Sbjct 14656 GTTGACAGGTAGGGCGTCAGTGAAGTATTTCTTTT-CAATATCAACGGCTTCGGTAATGA 14714 Query 49768 tcataattatattattttttgataatttatatttaatatgattcgcatatattaaACATG 49827 | | | | | |||| | ||| || | ||| | | | | ||||| | Sbjct 14715 TTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGT---GAAAAGAGCAAACAAG 14771 Query 49828 CAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 49887 ||||||| ||||||||||| || || ||| | || | || || || || || |||| Sbjct 14772 CAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTG 14831 Query 49888 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 49947 |||| || ||||||||||| | ||| || || |||||||| || ||| ||||| |||| Sbjct 14832 GCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATAC 14891 Query 49948 CCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCC 50007 | || ||| |||||||| | | || || |||||| | | |||| |||| Sbjct 14892 CTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAACGCATCTTTATCTGCAATCC 14951 Query 50008 AATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT- 50066 | |||| ||||| || || |||| |||||| | || || |||| || || || ||| Sbjct 14952 ATTTTAAGGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATA 15011 Query 50067 --AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 |||||| |||| | || ||||||||||| ||| Sbjct 15012 AGAATTCA---CTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTT 15068 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACT 50184 | ||||| | |||||| ||||| || ||| || | | || |||| | | Sbjct 15069 CCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTT 15128 Query 50185 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 50244 |||| || |||| ||||||||||| ||| || ||||||||||| || || | Sbjct 15129 GAACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAA 15188 Query 50245 AGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATT-TTCCCAA 50300 |||| |||| ||| | ||| || | ||||||| || || || ||| |||| | Sbjct 15189 AGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTCCAAT 15248 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 || ||| ||| || || | ||| | ||| || ||||| || |||||| | | || Sbjct 15249 CATGCAA-ATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTC 15307 Query 50361 TTATACATTTG 50371 || |||||||| Sbjct 15308 TTGTACATTTG 15318 >seq572 Length=74374 Score = 141 bits (156), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || || || | |||| || || ||| | Sbjct 55602 GTTCAATGATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGT 55661 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || ||||| |||| |||| || ||||| ||||| |||||||| | ||| |||| Sbjct 55662 TGTAGTCGGATAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTT 55721 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| |||||||| || || | || ||||| || | || | Sbjct 55722 GGTCAGGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAG 55781 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||||| ||||||| |||||||| ||||| ||||| || || | ||| || ||||| | Sbjct 55782 AAGATTCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCT 55841 Query 192539 T 192539 | Sbjct 55842 T 55842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471561468150