Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F000787615.1_202014-11-01] 669 sequences; 10,176,019 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq546 241 2e-58 seq352 89.7 6e-13 >seq546 Length=22432 Score = 241 bits (266), Expect = 2e-58 Identities = 896/1382 (65%), Gaps = 43/1382 (3%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||| || || | ||||| |||||||||||||| || | ||| | ||||| Sbjct 11086 TCTTCTAGAGTAAATATTGGAAGTGTAAGGTTCAAAGCATTCGTTGTAACCTAGAATTTG 11145 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCC 110815 | || || || || ||||||||||| | | || || | | | || || || || Sbjct 11146 AGATGTTGAAGCAGTCGGCATTGGTGCAACAAGCAATGAATTTCTCAAA--CCATTGGCC 11203 Query 110816 TTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCAC 110872 ||||| ||||| | ||||||||| || | || |||||| | ||| |||| Sbjct 11204 TTGATTTTCTCCTTTAATGAATCCCAGTCATA--TAAG-TTGGTTGGCTTCTTACCCCAA 11260 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 | |||||||| || | |||||||| || ||||| || ||||| || ||||| | || Sbjct 11261 AGATCAAACTGTAGGAGACCTTGGGATGCAGGAGATCCTTCAAAAGTCTCATATGGTCCA 11320 Query 110933 TGGGCTTCA--GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGA 110990 | | | | | |||||| || ||||||| | || ||||| ||||||||||| | Sbjct 11321 TC--CCTAATGGATAATTCAACACTTGCCTCCAAAGCAGCATGATAAATGGTTTCAAAAA 11378 Query 110991 TACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATA 111050 | || ||||| ||||| ||||| |||||||||| | | ||| || || Sbjct 11379 TTTGAATATTCAGTTCCTTTGCTTCTGGCGAATCAAATGGTAATCTCAACATCATGAAGG 11438 Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || | |||||| ||||| | | |||| ||||||| || |||||| || ||| | Sbjct 11439 CATCTGCCAAACCTTGGACACCAACAGCAATTGGTCTGTTTCTCATATTTGATCTTCTTG 11498 Query 111111 CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 111170 |||| ||||| ||||| | ||||| || |||| | || | ||||| || |||| || Sbjct 11499 CAGTTTCAACAGGATAGTAGTTTCTATCGATGATTTTATTCAAGTTTTTAGTCACAACCT 11558 Query 111171 TTGTGATTTCATGAAGTTTTTCATA-----ATCAAAAGTGCGAGTC-TC---TTCATTGA 111221 |||| |||||||| | || ||| | | ||| ||| | ||| || |||| | Sbjct 11559 TTGTAATTTCATGTAACTTCTCAAAGTTATACCAACAGTTCTTGTCATCACTTTCA---A 11615 Query 111222 CATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGT 111281 || | || | || | || ||||| ||||| || || || || || | Sbjct 11616 CAAATGCAGGCAATGCAACACTAGCTAAATTACAAACTGCTGTTTCCTCAGGTGATGAAT 11675 Query 111282 ACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTAC 111341 | || | |||||| ||||| |||||| || || |||||||| | ||| ||| Sbjct 11676 ATTCAACAATTTCACAGCATAAATTGGAAGATTTGATAACACCCAAATTTTGTTGATTAG 11735 Query 111342 TCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 |||||||| || |||||||| || | |||| | || || || || || || || | || Sbjct 11736 ATTTCTTGTTACATGCATCCTTATATAACATGAAAGGTGTACCAGTTTCAGTTTGAGCTT 11795 Query 111402 TGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGTTGGCCCGTCCCTCCG 111458 | || | | ||| ||| | | || | ||| | | ||| | ||| | Sbjct 11796 CTAAGATCGAATACCATAACTTTTG----TGCTTTAATTGTTCTCCTGCCTCTACCTTCT 11851 Query 111459 C-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGT 111517 | || || || || || | ||| || || ||||| | || | ||| ||| Sbjct 11852 CTTTCATATTTGGTATATAATTCTTTGAATTCATCACCATATACATCACTCAAACCAGGT 11911 Query 111518 GCCTTGTCT-GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 | ||| || || |||| | || ||| | || || |||||| | | ||| || | Sbjct 11912 G-CTTCACTAGGGGAGAAGAAAGTCCAATCTTCATTTTTCTCAACTCTTTCCATAAATAA 11970 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 || |||||||| | | | || | |||||| | | ||||| | ||| ||||| Sbjct 11971 ATCAGGAATCCATAAAGCAGGGAATAAATCTCTTGCTCTAATTTCTTCTTTACCGTGGTT 12030 Query 111637 GAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT 111696 | | |||| || || | ||||| | ||||| ||||||| ||| | ||| | Sbjct 12031 TTTCCTGATATCAATAAAATCAAGAATATCTGAATGCCAAGGCTCAATATATAGTGCAAA 12090 Query 111697 AGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 | || |||| | ||| |||| | ||||| | || ||| ||||| || | Sbjct 12091 CGCACCAGGTCTTT-TATTACCACCTTGGTCAACATACCTTGCAGTGTTATTAAAGACCC 12149 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 111812 || |||||||||||| |||| ||| |||||| || || |||| ||| | | | Sbjct 12150 TAATCATTGGAATAATCCCATTGGATGTACCATTAGTACCGGCAATATAAGAACCAGTTG 12209 Query 111813 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 111872 ||| | || ||| || || | ||||||||| ||||| || || || ||||| | Sbjct 12210 ATCTAATATTATGTATATGTAACCCAATACCACCAGCAGTTTTGGAAATCAAAGCACATT 12269 Query 111873 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 111932 | | | ||| |||||||||| | || || || ||||| | || | | ||| || Sbjct 12270 CTTTCAAAGTATCATAGATACCTTCAATGGAATCGTCCTTCATTGCAACTAAGAAACATG 12329 Query 111933 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992 ||||| || |||||| ||||| | |||||| || ||||| | || || |||| | Sbjct 12330 AAGACATTTGATTTCTTGGAGTACCCGAATTGAAAAGAGTTGGAGAAGCATGTGTGAA-A 12388 Query 111993 TACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 ||||| | |||||| | || || || | ||||||||||| || || || || || Sbjct 12389 TACCTCTTTGACATCAAATTATAAGTTTCAATAACAGAATCAATATCATCACCATGAATA 12448 Query 112052 CC 112053 || Sbjct 12449 CC 12450 >seq352 Length=45524 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/414 (65%), Gaps = 5/414 (1%) Strand=Plus/Plus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 || || |||||||| | |||||| | || | || || | | || || |||||| Sbjct 2702 ATTTTACGATCAAATCTACCCGGTCTTAGCAAAGCTGGGTCCAAAACGTCAACACGATTA 2761 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 || | |||| ||| |||| | ||| | ||| |||||||| ||| || | Sbjct 2762 GTACCTGCAAAAACAACAACATGATCGTCAGACTTAAATCCATCCATTTCGACTAGAAGC 2821 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT-TGC-- 11620 ||||| | || | |||||| |||||||| || |||||| | | | | | || Sbjct 2822 TGATTTAAGGTGTTTTCTCTTTCATCATTACCTCCCATACCTCTTCCCTTTCCTCTGGAT 2881 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | ||||| || ||||||| ||| |||||| ||||| |||||| | || | Sbjct 2882 TTTCCGATAGCATCGATTTCATCAACGAAAACAATAGATGGTGCATTTTCTCTTGCAGTC 2941 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | || ||||| | | ||||| |||||||||||||| |||||||| | | Sbjct 2942 TTGAACAACTCACGAACACGTGACGCACCAACACCAACAAACATTTCCACAAATTCAGAA 3001 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 |||| || | | ||| || || || |||||| || ||||| || || | || Sbjct 3002 CCAGA-AACAGAGTAGAACGGAACCCCTGCTTCACCAGCAGTGGCTTTAGCAAGTAACGT 3060 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||| | || || ||||| |||||||| || || Sbjct 3061 TTTACCTGTACCGGGTGGACCATTTAAAATAGCACCTCGAGGGATCTTTGCGCC 3114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026748082400