Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4829 282 5e-71 seq5022 228 1e-54 >seq4829 Length=1098 Score = 282 bits (312), Expect = 5e-71 Identities = 566/833 (68%), Gaps = 12/833 (1%) Strand=Plus/Minus Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || || ||||| || || || ||||| ||||| | ||| | |||| | | || ||| Sbjct 1073 GAAATGTTCTCCATAAAGTCGAATGGATTTGTAACGTCGTATACCTTTTCACAACCTAAT 1014 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | | ||||||||| || || || | ||| ||||| || |||||| Sbjct 1013 GCAATCAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATA 954 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGT-AAGAAATTCTTGTTCAATGGATACCGCATT 33520 || | | || || || || || |||| ||| | |||| |||||| || || | Sbjct 953 CCGAGCAAGTTGACAGGTAGGGCGTCAGTGAAGTATCTCTT-TTCAATATCAACGGCTTC 895 Query 33521 TGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAA 33580 || || || ||| || ||| ||| || | ||| |||||| ||| | ||| Sbjct 894 GGTAATGATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGTGAAAAGAGCAA 835 Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || |||||| || | ||| || ||||||| ||| | ||||| || ||||| | Sbjct 834 ACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAA 775 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | || | |||||| | ||| || ||||| || ||||| || || ||||| Sbjct 774 ACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAA 715 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT-- 33758 || ||||| || |||||||| || | | |||||| || | || | || | Sbjct 714 AATACCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATCTGC 655 Query 33759 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||| |||||| |||||||| | || | ||| || || ||||| || ||||| Sbjct 654 AATCCATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATT 595 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || | | | |||| || |||||| | |||||||| ||||| | | ||| | Sbjct 594 GAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGT 535 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 |||||||||||||||||| || || || || || ||||||||| ||||||| | ||| Sbjct 534 TTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAAT 475 Query 33938 CTGCACTTCTGT--ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 || || || | | ||| || || ||||||||||||| ||||| |||||| || Sbjct 474 TTGAACATCACTTGAGAAATTC--TCAACTAAATTTTCATTGACTATACCATCAGAAGCA 417 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTC 34052 ||||| ||||| | || | || || || |||| | | | | | || ||| Sbjct 416 GCAAAGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTC 357 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 ||||||| | |||||| || | ||| | ||| ||| | ||||| || ||||| |||||| Sbjct 356 CAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCC 297 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 || || ||||| | ||| || || ||||| | |||||| || | |||||| || Sbjct 296 TTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAAGAGAACAAACCT 244 >seq5022 Length=2556 Score = 228 bits (252), Expect = 1e-54 Identities = 777/1195 (65%), Gaps = 31/1195 (3%) Strand=Plus/Minus Query 62039 GTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGT 62098 ||| | |||||||||||| | || | || | | || | || || ||||| || || Sbjct 2184 GTCAACTGTGAATTGAATTGCCGCAGCAGCAGCCTGGGTTCTAAGGTAATACATACCTGT 2125 Query 62099 TTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATC 62158 || || || |||| || || |||||||| ||||| ||| | |||| Sbjct 2124 CTTGAGCCCCTTCTTCCAACCATAGAAATGCATGGACGTTAATTTACCCATTGTTGGATT 2065 Query 62159 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 62218 | | |||||| ||||||||||| ||||| | | | || || || || |||||||| Sbjct 2064 TTTCAAATGGATGTTCATAGATTGTGACTGATCCACGTATGCACCTCTATCAGCAGCCAT 2005 Query 62219 TTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 62277 | || || |||||||| | || ||||| | ||| ||||| || || ||| || |||| Sbjct 2004 ATCGATAATTGTCTTTTGCGAGATCTCCCAGACAGTCTTATATAAGTC-CTTGATCTCTT 1946 Query 62278 CTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCT 62334 |||| || | || |||||||| || ||| |||| || || || || || Sbjct 1945 GAGGAATATTCGGTAAGTTCTGAATCGAACCATTATCTGAGATGATATGGTTTTTCATAG 1886 Query 62335 CATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGA 62394 ||||||||| | | | || |||| |||| | | || ||||| || | |||| Sbjct 1885 AATCATTCCAGAGTCCCATTTCAACTAAATCTCTCAACATATAAGGGTTGACAATCTGGA 1826 Query 62395 ATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCAT 62454 |||| || | || ||||| | || ||||||||| || || ||||| | | || | Sbjct 1825 ATTCACCGGCTAAAACTCTTCTAGAGTAAATATTGGAAGTGTAAGGTTCAAAGCATTCGT 1766 Query 62455 TATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTC 62514 | | || | |||||||| ||||| ||||||||||| ||||| || | || ||||| Sbjct 1765 TGTAACCTAGAATTTGAGATGTTGAAGCAGTCGGCATTGGTGCAACAAGCAATGAATTTC 1706 Query 62515 TAAGACCGTATGTTCTGATTTTATCTTTTAGATG-TTCCCAATTCCAAAGATCCGACGGT 62573 | | ||| | | ||||||| || |||| ||| ||||| | | | | | || Sbjct 1705 TCAAACCATTGGCCTTGATTTTCTCCTTTA-ATGAATCCCAGTCATATAAGTTGGTTGGC 1647 Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTA 62633 | | | ||||| | ||| | || |||||| || | || Sbjct 1646 TTCTTACCCCAAAGATCAAACTGTAGGAGACCTTGGGATGCAGGAGATCCTTCAAAAGTC 1587 Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693 ||||||||||| ||| | || || || | ||| ||||| || ||| | | ||||||| Sbjct 1586 TCATATGGTCCATCCCTAATAGATAATTCAACACTTGCCTCCAAAGCAGCATGATAAATG 1527 Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT-TTAA 62752 |||||||| || | |||| || || | |||||| || ||||||||| |||| | || Sbjct 1526 GTTTCAAAAATTTGAATATTCAGTTCCTTTGCTTCTGGCGAATCAAATGG-TAATCTCAA 1468 Query 62753 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62812 | || || || || || || ||||| ||||||| | | || ||||| | |||| |||| Sbjct 1467 CATCATGAAGGCATCTGCCAAACCTTGGACACCAACAGCAATTGGTCTGTTTCTCATATT 1408 Query 62813 AGA---GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-GAGAT 62868 || || ||| ||| || |||||| || || |||| || |||||||| || | Sbjct 1407 TGATCTCCTTGCAGTTTC---AACAGGATAGTAGTTTCTATCGATGATTTTATTCAAGTT 1351 Query 62869 TTCTGACAATTACTTTG--ACCACAT---CCTTC----AGTTTGAGAAAATCAAATC-GC 62918 || | || ||||| | ||| |||| |||| | | | || || Sbjct 1350 TTTAGTCACAACCTTTGTAATTTCATGTAACTTCTCAAAGTT--ATACCAACAGTTCTTG 1293 Query 62919 CCATCTATTACAA-ACATG--TTCAATGCAACAGATGCCAGATTACACACGGCTACCTCA 62975 |||| || ||| | ||| |||||||||| || | |||||| || ||| || Sbjct 1292 TCATCACTTTCAACAAATGCAGGCAATGCAACACTAGCTAAATTACAAACTGCTGTTTCC 1233 Query 62976 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 63035 | || | ||||| | || ||| ||| | ||| | | |||||| || ||| Sbjct 1232 TCAGGTGATGAATATTCAACAATTTCACAGCATAAATTGGAAGATTTGATAACACCCAAA 1173 Query 63036 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63095 |||||||||||| || |||||||| ||||||||||| | ||||| || ||||||||| Sbjct 1172 TTTTGTTGATTAGATTTCTTGTTACATGCATCCTTATATAACATGAAAGGTGTACCAGTT 1113 Query 63096 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63155 ||| | |||| ||||| |||| | ||| | | | || || ||| | || | Sbjct 1112 TCAGTTTGAGCTTCTAAGATCGAATACCATAACTTTTGTGCTTTAATTGTTCTCCTGCCT 1053 Query 63156 CTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63210 || | ||||||||| ||| ||||| ||| || ||| || || || | |||| Sbjct 1052 CTACCTTCTCTTTCATATTTGGTATATAATTCTTTGAATTCATCACCATATACAT 998 Score = 219 bits (242), Expect = 5e-52 Identities = 570/865 (66%), Gaps = 7/865 (1%) Strand=Plus/Minus Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 |||||| |||||||| || || | |||| || | | ||||| | ||| || || || Sbjct 924 AATATCTGAATGCCAAGGCTCAATATATAGTGCAAACGCACCAGGTCTTTTATTACCACC 865 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | || || || ||||||||| | || || | |||||||||||| || || || Sbjct 864 TTGGTCAACATACCTTGCAGTGTTATTAAAGACCCTAATCATTGGAATAATCCCATTGGA 805 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | ||||||| ||||||| ||||| ||| | | | ||||||| || || || Sbjct 804 TGTACCATTAGTACCGGCAATATAAGAACCAGTTGATCTAATATTATGTATATGTAACCC 745 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || |||| || || || || ||| ||| || || |||||||| ||||| Sbjct 744 AATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTATCATAGATACCTTC 685 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 ||| ||| || |||| || || ||||| ||||||||| | | | ||| || Sbjct 684 AATGGAATCGTCCTTCATTGCAACTAAGAAACATGAAGACATTTGATTTCTTGGAGTACC 625 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 || ||| || | || |||||||| || || || | | | || | | ||| || || Sbjct 624 CGAATTGAAAAGAGTTGGAGAAGCATGTGTGAAATACCTCTTTGACATCAAATTATAAGT 565 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 |||||| | || || ||||| |||||| || || || || | ||||| | || Sbjct 564 TTCAATAACAGAATCAATATCATCACCATGAATACCAACGGCAACTCTCATTATTAAATG 505 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 || || ||||| |||| || |||||| | || | || |||| || ||||| Sbjct 504 TTGGGGCCTTTCGGCAATCTTACCATTTATTCTTAAAAGATAACTCCTTTCTAATGTTTT 445 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 |||||||||||||| || ||||||| || ||| ||| | || | ||| Sbjct 444 GAAACCAAAATAGTTATAATTGAAGTCTCTATCATAATGAATTGCATCATCTAATATATT 385 Query 63908 CTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATT 63967 | || ||| | || || ||| || ||||||| || |||| | |||| ||||| Sbjct 384 CGCATTTTTTTGGACAATTTCCCAAGTCTCCTTTGAAATCATTGGAGCAGGTTTACCATT 325 Query 63968 TTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 64027 |||||||| || ||| | ||| | | | |||||| ||| || |||||| Sbjct 324 TTTAGGATCAATATAAGTATATAGTTGATTAACAACTTCAGAGAATTTCTTAGTTGTTTG 265 Query 64028 CTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG--TTG- 64084 ||| |||| ||||| || || | ||| || || | | |||||||| ||||| | | Sbjct 264 CTTTTGTAAGTTTGAAATTGCAACTCTAGCAGCCAATACCGCATAATCTGGATGGATAGT 205 Query 64085 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 ||| || || || || |||| || || | | | || ||||| || ||||| || || Sbjct 204 TGTCATATAA---GCAGCAGTTTCAGCAGCTAAATTATCTAATTCGACAGTTGTAACACC 148 Query 64145 ATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTT 64204 || ||| | || ||||| |||| || ||| | ||||| | || | || Sbjct 147 ATCATAAACACCAGAAATAATCTTCTGAGTAATTGCAGAAGGATGCACGTGTCTTGAGTC 88 Query 64205 TAAGCCATAGCACAATTT-TCTAAT 64228 ||| ||||| |||||| |||||| Sbjct 87 TAAACCATATGCCAATTTCTCTAAT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772032696640