Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4829 221 3e-52 seq2706 140 7e-28 seq2598 140 7e-28 seq3093 104 5e-17 >seq4829 Length=1098 Score = 221 bits (244), Expect = 3e-52 Identities = 432/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Plus Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729 ||||| |||||| | ||| || ||| || ||||| | |||||||| || || Sbjct 217 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 273 Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||| |||| | || ||||| ||||||| || ||| | ||| Sbjct 274 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 333 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 || || | || || |||||||| ||| | ||| | || |||||| || || Sbjct 334 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 393 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || |||| ||||| ||||| | | ||||||||| || || |||||| |||| ||| Sbjct 394 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 453 Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 || |||| |||| | || || ||||| || || | |||||| || || ||||| || Sbjct 454 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 511 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | || | |||| || |||||||| || | ||| Sbjct 512 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 571 Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 ||| | |||| || || ||| | | || ||| || ||| | | |||| Sbjct 572 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAAAG 630 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140 | ||||||||| | |||||||| |||| | || || | ||| ||||| || Sbjct 631 GCCGAATGGGCTTTAAAATGGATTGCAGATAAAGATGCATTGTTTGCAGAGAGGTTGGTG 690 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 691 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 750 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 || || ||||| | |||||||| || || ||||| ||||| |||| | || || ||| Sbjct 751 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 810 Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| ||| || |||||||| Sbjct 811 GGTTTACATACCGATTTTGCTTGTTT 836 >seq2706 Length=450 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 227 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 168 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 167 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 108 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 107 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 48 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||||||||||||||| | ||||| ||||| || ||||| Sbjct 47 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 1 >seq2598 Length=450 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 227 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 168 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 167 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 108 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 107 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 48 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||||||||||||||| | ||||| ||||| || ||||| Sbjct 47 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 1 >seq3093 Length=1836 Score = 104 bits (114), Expect = 5e-17 Identities = 127/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 165104 GATGAATGGAATACTTGGAATAAAAT-ACACGATCCTGTTTTACATATAGAGCTAAGAAG 165162 |||||||||| | |||||||| | ||| |||||||| || |||||||||||||||| Sbjct 1111 GATGAATGGAGTTCTTGGAATCTCAGGACA-GATCCTGTGTTGCATATAGAGCTAAGAAA 1169 Query 165163 ATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGC-TA 165221 |||||||||||| | | || || || |||| ||||| | ||| || || || | Sbjct 1170 ATGGGCAGATATTTTAATTATTGCCCCTCTAACGGCAAATACTTTGAGTAAAATTGCATT 1229 Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 | ||| | ||| |||| |||||||| | | |||||||||||||||| Sbjct 1230 AGGGT-TGTGTGATAATTTGTTAACTAATGTTGTTAGAGCGTGGAATA 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151313013733904