Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4829 277 3e-69 seq2706 150 3e-31 seq2598 150 3e-31 seq730 125 1e-23 >seq4829 Length=1098 Score = 277 bits (306), Expect = 3e-69 Identities = 523/761 (69%), Gaps = 22/761 (3%) Strand=Plus/Minus Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAG 18042 || ||||||||| ||||| |||||||| || |||||||||| ||||||||| || | Sbjct 1005 TAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAA 946 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 ||| |||||| || ||| | | || ||||| || || ||||| | || | || | Sbjct 945 GTTGACAGGTAGGGCGTCAGTGAAGTATCTCTTT-TCAATATCAACGGCTTCGGTAATGA 887 Query 18102 TGTTTATTACCCTAGATT----TTGGCAATTTATTAATTATGTGATTATAATATAATAAA 18157 | | | | || | || | || || | || |||||| | | | ||| Sbjct 886 TTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAA--ATGTGA-----AAAGAGCAAA 834 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| || ||||||||||||||||| | || | ||||| ||||| || Sbjct 833 CAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAA 774 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||||| ||||| | ||| || || ||||| || || ||| ||||| Sbjct 773 CCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAA 714 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCT-C 18334 ||||| ||||| ||| || || || | || || || ||||| | || || | | || | Sbjct 713 ATACCTTCAACAGCA-GCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATCTGC 655 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||||||| |||||||| | | ||||| || || | || || ||| Sbjct 654 A--ATCCATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCA 597 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || || || |||| || | |||||| || ||||| || || || |||||||| Sbjct 596 TTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAA 537 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||| ||||| ||| ||||||| || || || | ||| || || ||||||| ||| Sbjct 536 GTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGA 477 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| || || | || | || || ||||| ||||| |||||||| |||| || Sbjct 476 ATTTGAACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCA 417 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTC 18631 || || || || | ||| | |||||| | ||||||| || || | ||||||| Sbjct 416 GCAAAGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTC 357 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || |||| | |||||| || ||||||| ||| |||| ||||| ||||||| ||| ||| Sbjct 356 CAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCC 297 Query 18692 TGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 | |||||||||| |||| || | || | || ||||| Sbjct 296 TTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAA 256 >seq2706 Length=450 Score = 150 bits (166), Expect = 3e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || ||||| || |||||||| ||||||||||| ||| Sbjct 1 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCT 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||| || ||||| || || || || ||| Sbjct 61 GACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 120 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| |||||||| | |||||| |||||||| || || || || Sbjct 121 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAAC 180 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 181 AT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 229 >seq2598 Length=450 Score = 150 bits (166), Expect = 3e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || ||||| || |||||||| ||||||||||| ||| Sbjct 1 ATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCT 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||| || ||||| || || || || ||| Sbjct 61 GACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAA 120 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| |||||||| | |||||| |||||||| || || || || Sbjct 121 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAAC 180 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 181 AT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 229 >seq730 Length=387 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || || || || || || ||||| |||||||| ||| |||| Sbjct 1 ATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCTTCT 60 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || | || || |||||||| ||||| || || || || ||| Sbjct 61 GACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGACCAA 120 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| |||||||| | |||||| ||||||||||| || || | Sbjct 121 CAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACA-- 178 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 179 ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731819049060800