Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4829 158 2e-33 seq2706 149 1e-30 seq2598 149 1e-30 seq730 141 2e-28 >seq4829 Length=1098 Score = 158 bits (174), Expect = 2e-33 Identities = 368/558 (66%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| |||||||| ||||||||||| || || ||| | || | || || || || Sbjct 836 AAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTC 777 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940 || |||||||| || ||||||||||| | ||| || || |||||||| || ||| ||| Sbjct 776 AAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAG 717 Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000 || ||||| || ||| |||||||| | | || || |||||| | | | |||| Sbjct 716 AAAATACCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATCT 657 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 50060 ||||| |||| |||||| || || |||| |||||| | || || |||| || || Sbjct 656 GCAATCCATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCA 597 Query 50061 TTAAAT---AATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAA 50117 || ||| |||||| |||| | || ||||||||| Sbjct 596 TTGAATAAGAATTCA---CTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAA 540 Query 50118 TACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT 50177 || |||| ||||| | |||||| ||||| || ||| || | | || ||| Sbjct 539 TAAGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCT 480 Query 50178 GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGAT 50237 | | ||||| || |||| ||||||||||| ||| || ||||||||||| Sbjct 479 GGAATTTGAACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGAA 420 Query 50238 GCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA---ATT- 50293 || || ||||| |||| ||| | ||| || | ||||||| || || || ||| Sbjct 419 GCAGCAAAGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTG 360 Query 50294 TTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353 |||| | || ||| ||| || || | ||| | ||| || ||||| || |||||| | Sbjct 359 TTCCAATCATGCAA-ATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTC 301 Query 50354 GGATTTTTTATACATTTG 50371 | || || |||||||| Sbjct 300 TGCCTTCTTGTACATTTG 283 >seq2706 Length=450 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || ||||| || | ||||| || ||| || || || || |||| Sbjct 228 ACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAG 170 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| |||| || ||||| ||||| |||||||| | ||| ||||| ||||||| Sbjct 169 ACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTG 110 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| |||||| || ||||| |||| || || || || | Sbjct 109 GAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGA 50 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| || ||||||||||| ||||||| ||| || ||||| Sbjct 49 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 1 >seq2598 Length=450 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | || ||||| || | ||||| || ||| || || || || |||| Sbjct 228 ACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAG 170 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || |||| |||| || ||||| ||||| |||||||| | ||| ||||| ||||||| Sbjct 169 ACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTG 110 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| |||||| || ||||| |||| || || || || | Sbjct 109 GAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGA 50 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| ||||| || ||||||||||| ||||||| ||| || ||||| Sbjct 49 CTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 1 >seq730 Length=387 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || || || | |||| || || ||| | Sbjct 238 GTTCAATGATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGT 179 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || ||||| |||| |||| || ||||| ||||| |||||||| | ||| |||| Sbjct 178 TGTAGTCGGATAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTT 119 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || ||||| |||||||| || || | || ||||| || | || | Sbjct 118 GGTCAGGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAG 59 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| ||||||| |||||||| ||||| ||||| || || | ||| || ||||| Sbjct 58 AAGATTCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984406992193800