Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5022 181 3e-40 seq4829 131 4e-25 seq1125 87.8 4e-12 >seq5022 Length=2556 Score = 181 bits (200), Expect = 3e-40 Identities = 348/508 (69%), Gaps = 15/508 (3%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||||||||||||||||||| | ||| | |||| | | | | ||||| |||| Sbjct 431 ACTATTTTGGTTTCAAAACATTAGAAAGGAGTTATCTTTTAAGAATAAATGGTAAGATTG 490 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | || ||||| | | | | ||||| ||||||||||||| |||||||| Sbjct 491 CCGAAAGGCCCCAACATTTAATAATGAGAGTTGCCGTTGGTATTCATGGTGATGATATTG 550 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 | ||||||||||| |||| || | | || ||| || |||| |||||| | Sbjct 551 ATTCTGTTATTGAAACTTATAATTTGAT--GTCAAAG---AGGTATTTCACACATGCTTC 605 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAG 110535 ||| || || || || | || ||| || ||| || |||| || |||||| | | Sbjct 606 TCCAACTCTTTTCAATTCGGGTACTCCAAGAAATCAAATGTCTTCATG-TTTCTTAGTTG 664 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTT 110595 ||| || || ||||| ||||||||||| |||||| || | |||||| |||| | |||| Sbjct 665 CAATGAAGGACGATTCCATTGAAGGTATCTATGATACTTTGAAAGAATGTGCTTTGATTT 724 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | |||| |||| || ||||| | || | ||| ||||| | |||| || | ||| Sbjct 725 CCAAAACTGCTGGTGGTATTGGGTTACATATACATAATATTAGATCAACTGGTTCTTATA 784 Query 110656 TCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACA 110715 | || | || ||| | || | ||| || |||||||| | || ||||| || ||| Sbjct 785 TTGCCGGTACTAATGGTACATCCAATGGGATTATTCCAATGATTAGGGTCTTTAATAACA 844 Query 110716 CTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCG 110772 |||||| ||||| | |||||||| ||| ||| ||| | ||||| | ||| | | Sbjct 845 CTGCAAGGTATGTTGACCAAGGTGGTAATAAAAGACCTGGTGCGTTTGCACTATATATTG 904 Query 110773 AACCTTGGCATTCAGATATATTTGAATT 110800 | ||||||||||||||||| |||| || Sbjct 905 AGCCTTGGCATTCAGATATTCTTGATTT 932 >seq4829 Length=1098 Score = 131 bits (144), Expect = 4e-25 Identities = 467/718 (65%), Gaps = 23/718 (3%) Strand=Plus/Plus Query 131432 CTATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTC 131491 || |||||||| || ||||||| ||| | ||||| ||||| | | || | ||| Sbjct 253 CTCTTTCCAATCAAGTATCACGAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTC 312 Query 131492 TGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTG 131551 ||||||| || || || ||| | |||||||| | |||||||| || ||| | ||| Sbjct 313 TGGACTGCGGAGGAAATTGATCTCTCCAAAGATTTGCATGATTGG-AACAATAGA--TTG 369 Query 131552 AATGAAAA----AGATTTTG--TTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGC 131605 || ||||| ||||| | |||| | |||||| || ||||| || | |||||| Sbjct 370 AACGAAAATGAAAGATTCTTCATTTCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGT 429 Query 131606 ATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAAT--TGATATTCCTGAAGTAA 131663 || || | ||||||| | ||| |||||| ||||| || | | ||||| || | | Sbjct 430 ATAGTCAATGAAAATTTAGTTGAGAATTTC--TCAAGTGATGTTCAAATTCCAGAGGCTA 487 Query 131664 CATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTAT 131723 || ||||| || ||| | ||| |||||| || | ||||| |||| Sbjct 488 AATGTTTCTATGGGTTCCAAATTATGATGGAAAACATTCATTCGGAAACTTATTCTTTAT 547 Query 131724 TGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATT---ATTTGATGCTGTAA 131780 ||||||| | | | ||| || | | || || | |||| ||| |||| | Sbjct 548 TGATTGATACTTACATCAAAGATCCAAAGGA---AAGTGAATTCTTATTCAATGCAATTG 604 Query 131781 ATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATT 131840 | | | | || || || | || || ||||||||| | ||||||||| |||| | Sbjct 605 AAACAATCCCATGTATCAAGGAAAAGGCCGAATGGGCTTTAAAATGGATTGCAGATAAAG 664 Query 131841 CCGCTAATTTTTCTACA-AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCA 131899 || | | ||| | | || | || || |||||| |||||||||||| ||||| || Sbjct 665 ATGC-ATTGTTTGCAGAGAGGTTGGTGGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCT 723 Query 131900 GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 ||| | || | ||||| ||| | || ||| | || |||||||| || | | || Sbjct 724 GGTTCATTTGCATCCATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACGTTC 783 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTAT 132019 ||||| | | || | |||||||||| || ||||| || |||||| || ||| | Sbjct 784 TCCAACGAGCTGATTTGTAGAGATGAAGGTTTACATACCGATTTTGCTTGTTTGCTCTTT 843 Query 132020 AGAAAATTTGCTGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTT 132079 | | || ||| | || ||||| | | | | |||| | || | |||||| ||| Sbjct 844 TCACATTTGAACCATACCCCAGACGAAAAAATTGTCAGACAAATCATTACCGAAGCCGTT 903 Query 132080 GATATCGAGAAGGAGTTTATT-ACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT 132136 ||||| || || ||| | || || || || | ||| ||| ||| | || |||||| Sbjct 904 GATATTGA-AAAGAGATACTTCACTGACGCCCTACCTGTCAACTTGCTCGGTATGAAT 960 >seq1125 Length=5142 Score = 87.8 bits (96), Expect = 4e-12 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| | || |||||| ||| | |||||| | || || || | ||||| |||||| Sbjct 1171 CATTTAATGGATAATGATCCGGTGTTATTCAATCGTCAGCCTTCTTTACATAAGATGTCT 1230 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTG 305426 |||||| ||| | |||||||| ||| | ||| ||||| || | ||| || | Sbjct 1231 ATGATGTGTCACAGGGTCAAAGT--TATGCCATATTCCACATTCAGAATGAATTTATCCG 1288 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | ||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||||| Sbjct 1289 TTACATCACCTTACAATGCTGATTTCGATGGTGATGAAATGAACTTGCATGTTCCTCAAT 1348 Query 305487 CAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTC 305546 | | | || | ||||| |||| || | ||| | || | | |||||||||| Sbjct 1349 CTTACGAAACCAGAGCTGAACTATCCGAGCTTTGTGCGGTTCCTTTGCAGATCATTTCTC 1408 Query 305547 C 305547 | Sbjct 1409 C 1409 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT-CA 304947 ||||||||| |||| || | ||||||||||| |||||||| |||||| ||| || Sbjct 757 CAATATCATGTTGCTACTTATATGGATAATGATATTGCTGGTCAGCCGCAGGC-TCTACA 815 Query 304948 AAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTAT 305007 | ||| || ||||| | || |||||| || |||| ||||||||||||||| | Sbjct 816 GAAATCAGGTAGACCGATCAAATCTATTAGAGCTCGTCTTAAGGGTAAAGAGGGTCGTTT 875 Query 305008 TCGAGGTAATCTAATGGGAAAACGTGTTGATTTT 305041 ||||||| | ||||| || | ||||||||| Sbjct 876 GAGAGGTAACTTGATGGGTAAGAGAGTTGATTTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186724787446268