Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001879685.1_202016-11-17] 5,788 sequences; 7,246,798 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5022 105 7e-18 seq4829 87.8 2e-12 >seq5022 Length=2556 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||||| | || ||| || |||||||| | || |||| | || || ||| || Sbjct 1952 TCAAGGACTTATATAAGACTGTCTGGGAGATCTCGCAAAAGACAATTATCGATATGGCTG 2011 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 ||||| | ||||| ||| | || ||||| || ||| |||||||| || | ||||| Sbjct 2012 CTGATAGAGGTGCATACGTGGATCAGTCACAATCTATGAACATCCATTTGAAAAATCCAA 2071 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 || ||| || || | || ||||| || || || ||||||||||| |||||||| |||| Sbjct 2072 CAATGGGTAAATTAACGTCCATGCATTTCTATGGTTGGAAGAAGGGGCTCAAGACAGGTA 2131 Query 55908 TGTACTATCTGCGGACCC 55925 |||| || || | |||| Sbjct 2132 TGTATTACCTTAGAACCC 2149 >seq4829 Length=1098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 365/575 (63%), Gaps = 6/575 (1%) Strand=Plus/Minus Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||||| || ||| | ||||||||||| | |||| || || || |||| | || Sbjct 830 GCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCT 771 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || | ||| |||||||| ||||||| || |||||| |||||| || Sbjct 770 GGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATA 711 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA---GTCATC 74927 ||||| ||| ||||| || || | | | || ||| |||||| | | ||| Sbjct 710 CCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATCTGCAATC 651 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAG 74987 || | ||||||||| || ||| |||| |||| || || || || | ||| Sbjct 650 CATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAAT 591 Query 74988 AGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 | | | | | || | ||||| |||| | | ||||||| | || || || ||| Sbjct 590 AAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTCC 531 Query 75048 GAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 |||||||| || | | ||| || | |||||| | ||||||| ||| || Sbjct 530 GAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGA 471 Query 75108 ACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAA 75167 ||||| |||| |||||| | | ||| || |||| || || || || || || || Sbjct 470 ACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAG 411 Query 75168 AAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATCC 75224 || || || || || || ||| | |||| || | | | |||| |||||| Sbjct 410 AACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTCCAATCA 351 Query 75225 TTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTG 75284 | || || | | |||||| ||||| | ||||||||| | ||||| ||| Sbjct 350 TGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTG 291 Query 75285 TACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||| ||| | || | || ||||||||||| Sbjct 290 TACATTTGCCAAATTTCGTGATACTTGATTGGAAA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176408922400