Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 seq115 93.3 4e-14 seq11 93.3 4e-14 seq1 86.0 5e-12 >seq2 Length=717657 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||| ||||| ||||| | | ||| | || || | || || || Sbjct 277383 GTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACCATCTTCTAATTGCTTACCT 277442 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | |||||||| || ||||| || | |||||||| || ||||||||| || Sbjct 277443 GCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTG 277502 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| | || ||| | |||||||||||| |||||||| || Sbjct 277503 ACATTGTCGATGGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTC 277562 Query 21159 TTGACAAATATTTGCATTTTGA 21180 |||||||| |||||||| |||| Sbjct 277563 TTGACAAAAATTTGCATCTTGA 277584 >seq115 Length=8510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || |||||||||||||| ||||| | || ||| | || || | || || || Sbjct 1908 AGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACC 1849 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | |||||||| || ||||| || | ||||||||||| ||| || || Sbjct 1848 TGCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTT 1789 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||| ||| | ||| ||| | |||||| ||||| || ||||| || Sbjct 1788 GACATTGTCGATAGTGTCAGATGACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGT 1729 Query 21158 TTTGACAAATATTTGCATTTT 21178 ||| ||||| |||||||| || Sbjct 1728 TTTAACAAAAATTTGCATCTT 1708 >seq11 Length=336598 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| || |||||||||||||| ||||| | || ||| | || || | || || || Sbjct 4950 AGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACC 5009 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | |||||||| || ||||| || | ||||||||||| ||| || || Sbjct 5010 TGCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTT 5069 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||| ||| | ||| ||| | |||||| ||||| || ||||| || Sbjct 5070 GACATTGTCGATAGTGTCAGATGACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGT 5129 Query 21158 TTTGACAAATATTTGCATTTT 21178 ||| ||||| |||||||| || Sbjct 5130 TTTAACAAAAATTTGCATCTT 5150 >seq1 Length=782669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| || || ||||||| || ||||| || Sbjct 231399 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231458 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || ||||||||||||||||||| || | || |||||||| |||||| || Sbjct 231459 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231518 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | |||| |||| || || || ||||| |||| || Sbjct 231519 ACATTGTCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231578 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 231579 TTGACAAAGATCTGCAT 231595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| || || ||||||| || ||||| || Sbjct 231627 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231686 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || ||||||||||||||||||| || | || |||||||| |||||| || Sbjct 231687 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231746 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | |||| |||| || || || ||||| |||| || Sbjct 231747 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231806 Query 21159 TTGACAAATATTTGCATTT 21177 |||||||| || ||||||| Sbjct 231807 TTGACAAAGATCTGCATTT 231825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257861966160