Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 311 7e-80 >seq10 Length=365393 Score = 311 bits (344), Expect = 7e-80 Identities = 602/877 (69%), Gaps = 21/877 (2%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| ||||| |||||||||||||| || | | ||||| || |||||||| ||||| Sbjct 99478 ACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTCTCCATAAAGTCGAAT 99537 Query 12935 GGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCA 12991 |||||| | ||| | |||| |||| ||| |||||| | | | | ||| || ||| Sbjct 99538 GGATTTGT--AACG-TCGTATACCTTTTCACAACCTAATGCAATCAGTAGTCTATCTGCA 99594 Query 12992 ACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATA 13051 |||||||| | ||||| ||| ||||| ||||| || | || || ||||| | Sbjct 99595 ACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCAAGTTGACAGGTAGG 99654 Query 13052 GCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACG 13111 || || || || | | ||||| |||||||| |||||| ||| || | ||| | | Sbjct 99655 GCGTCAGTGAAGTATCTCTTTTCAATATCAACGGCTTCGGTAATGATTTGTCTGACAATT 99714 Query 13112 TTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAAT 13171 || || ||| | || | ||| ||| | || ||| |||||||| || || Sbjct 99715 TTTTCGTCTGGGGTATGGTTCAAATGTGAAAAGAGCAAACAAGCAAAATCGGTATGTAAA 99774 Query 13172 CCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTT 13231 ||||||||||||| || |||||||| || || || | ||| ||||| | |||| ||| Sbjct 99775 CCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCTGGCATCAAACCTCTCTTT 99834 Query 13232 TTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAAC 13291 || | ||| || || | ||||| ||||| || || || || |||||||| || ||||| Sbjct 99835 TTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATACCTTCAACAGCAGCAAAT 99894 Query 13292 GCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTT 13350 || | |||||| || || || || |||| ||| | ||||| ||| ||||| | Sbjct 99895 GCCACCAACCTCTCTGCAAACAATGCATCTTTA-TCTGCAATCCATTTTAAAGCCCATTC 99953 Query 13351 TGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTT 13410 || |||| || | || || |||| ||||| || ||||| | | ||||||| Sbjct 99954 GGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAATAAGAATTCACTTTCCTT 100013 Query 13411 ACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCAT 13470 ||| || |||||||| |||||||| ||| |||| |||||||| |||||||| Sbjct 100014 TGGATCTTTGATGTAAGTATCAATCAATAAAGAATAAGTTTCCGAATGAATGTTTTCCAT 100073 Query 13471 CGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC---GGAGTAAAA 13527 | |||||||| ||||| |||||| ||||||||| | ||||| || ||| ||| Sbjct 100074 CATAATTTGGAACCCATAGAAACATTTAGCCTCTGGAATTTGAACATCACTTGAG--AAA 100131 Query 13528 TCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 | | || |||| ||||| || ||||| || ||| ||||||||| || || || | Sbjct 100132 T-TCTCAACTAAATTTTCATTGACTATACCATCAGAAGCAGCAAAGAACGCTAGAA--CT 100188 Query 13588 CTT--AATAAAttttttttCGTTTTCTGACAA---CTTTAACCAATCTGGAAAATCTTTT 13642 ||| ||| || | |||| ||||| ||| || |||||| | |||||||| Sbjct 100189 CTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATTGTTCCAATCATGCAAATCTTTG 100248 Query 13643 GATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCAT 13702 || | ||| | ||||| | ||||| ||||| || | |||||||| ||||| ||| Sbjct 100249 GAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTCTGCCTTCTTGTACATTTGCCAA 100308 Query 13703 ATATCCTTATAAACAATGGGAAACACAACGTATCTTC 13739 || || | ||| || ||||| | ||| | |||| Sbjct 100309 ATTTCGTGATACTTGATTGGAAAGAGAACAAACCTTC 100345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981034324520