Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10 221 3e-52 seq115 140 7e-28 seq11 140 7e-28 seq1 134 3e-26 seq4 109 1e-18 >seq10 Length=365393 Score = 221 bits (244), Expect = 3e-52 Identities = 432/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Minus Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729 ||||| |||||| | ||| || ||| || ||||| | |||||||| || || Sbjct 100370 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 100314 Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||| |||| | || ||||| ||||||| || ||| | ||| Sbjct 100313 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 100254 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 || || | || || |||||||| ||| | ||| | || |||||| || || Sbjct 100253 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 100194 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || |||| ||||| ||||| | | ||||||||| || || |||||| |||| ||| Sbjct 100193 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 100134 Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 || |||| |||| | || || ||||| || || | |||||| || || ||||| || Sbjct 100133 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 100076 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | || | |||| || |||||||| || | ||| Sbjct 100075 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 100016 Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 ||| | |||| || || ||| | | || ||| || ||| | | |||| Sbjct 100015 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAAAG 99957 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140 | ||||||||| | |||||||| |||| | || || | ||| ||||| || Sbjct 99956 GCCGAATGGGCTTTAAAATGGATTGCAGATAAAGATGCATTGTTTGCAGAGAGGTTGGTG 99897 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 99896 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 99837 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 || || ||||| | |||||||| || || ||||| ||||| |||| | || || ||| Sbjct 99836 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 99777 Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| ||| || |||||||| Sbjct 99776 GGTTTACATACCGATTTTGCTTGTTT 99751 >seq115 Length=8510 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 1937 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1878 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 1877 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 1818 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 1817 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 1758 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 1757 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 1708 >seq11 Length=336598 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 4921 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 4980 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 4981 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 5040 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 5041 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 5100 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 5101 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 5150 >seq1 Length=782669 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 231627 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231686 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 231687 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231746 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 231747 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231806 Query 104543 TTTACAAATATCTGCATTT 104561 || ||||| |||||||||| Sbjct 231807 TTGACAAAGATCTGCATTT 231825 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 230943 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231002 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 231003 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231062 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 231063 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231122 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 231123 TTGACAAAGATCTGCAT 231139 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 231171 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231230 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 231231 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231290 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 231291 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231350 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 231351 TTGACAAAGATCTGCAT 231367 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 231399 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 231458 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 231459 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 231518 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 231519 ACATTGTCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 231578 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 231579 TTGACAAAGATCTGCAT 231595 >seq4 Length=639611 Score = 109 bits (120), Expect = 1e-18 Identities = 128/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 165104 GATGAATGGAATACTTGGAATAAAAT-ACACGATCCTGTTTTACATATAGAGCTAAGAAG 165162 |||||||||| | ||||||||| | ||| |||||||| || |||||||||||||||| Sbjct 321807 GATGAATGGAGTTCTTGGAATATCAGGACA-GATCCTGTGTTGCATATAGAGCTAAGAAA 321865 Query 165163 ATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGC-TA 165221 |||||||||||| | | || || || |||| ||||| | ||| || || || | Sbjct 321866 ATGGGCAGATATTTTAATTATTGCCCCTCTAACGGCAAATACTTTGAGTAAAATTGCATT 321925 Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 | ||| | ||| |||| |||||||| | | |||||||||||||||| Sbjct 321926 AGGGT-TGTGTGATAATTTGTTAACTAATGTTGTTAGAGCGTGGAATA 321972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394564404080