Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq165 120 5e-23 seq42 120 5e-23 seq6 107 3e-19 >seq165 Length=4219 Score = 120 bits (132), Expect = 5e-23 Identities = 179/253 (71%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| || |||||||||||||||| || ||||||||||| || | | | ||| | Sbjct 659 AGATC-CTCAGAGATAACATCCAAGGTATTACCAAGCCAGCAATTAGAAGATTAGCTAGA 717 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| |||||| | |||| | ||| | || ||||| || | | ||| | ||| Sbjct 718 AGAGGTGGTGTCAAGAGAATCTCGGCTTTGATTTACGAAGAAGTTAGGGCAGTTCTTAAG 777 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| | | ||| || ||||| || ||||| || ||||| || | ||| Sbjct 778 ACTTTCCTTGAAAACGTCATTAGAGATGCAGTCACTTATACTGAACACGCAAAGAGAAAG 837 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || ||||||||| | ||| |||||||||| ||||| | ||||| | | |||||||| Sbjct 838 ACCGTCACCTCCTTAGATGTCGTCTATGCTTTGAAGAGACAAGGTAGAACCCTTTATGGT 897 Query 16688 TTTGGAAGTTAAT 16700 ||||| ||| || Sbjct 898 TTTGGTGGTTGAT 910 >seq42 Length=53431 Score = 120 bits (132), Expect = 5e-23 Identities = 179/253 (71%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| || |||||||||||||||| || ||||||||||| || | | | ||| | Sbjct 3332 AGATC-CTCAGAGATAACATCCAAGGTATTACCAAGCCAGCAATTAGAAGATTAGCTAGA 3274 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| |||||| | |||| | ||| | || ||||| || | | ||| | ||| Sbjct 3273 AGAGGTGGTGTCAAGAGAATCTCGGCTTTGATTTACGAAGAAGTTAGGGCAGTTCTTAAG 3214 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| | | ||| || ||||| || ||||| || ||||| || | ||| Sbjct 3213 ACTTTCCTTGAAAACGTCATTAGAGATGCAGTCACTTATACTGAACACGCAAAGAGAAAG 3154 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || ||||||||| | ||| |||||||||| ||||| | ||||| | | |||||||| Sbjct 3153 ACCGTCACCTCCTTAGATGTCGTCTATGCTTTGAAGAGACAAGGTAGAACCCTTTATGGT 3094 Query 16688 TTTGGAAGTTAAT 16700 ||||| ||| || Sbjct 3093 TTTGGTGGTTGAT 3081 >seq6 Length=560432 Score = 107 bits (118), Expect = 3e-19 Identities = 175/251 (70%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 ||||| ||| |||||||||||||||| || ||||||||||| ||| | | | ||| | Sbjct 63486 AGATC-CTTAGAGATAACATCCAAGGTATTACCAAGCCAGCAATCAGAAGATTAGCTAGA 63544 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | ||||| || ||| | | || | ||| | || ||||| | | | ||| | ||| Sbjct 63545 AGAGGTGGTGTTAAGAGAATTTCAGCTTTGATTTACGAAGAAGTCAGAGCCGTTCTTAAG 63604 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | |||||| | | |||||| || || || |||||||| ||||| || | ||| Sbjct 63605 ACCTTCCTTGAAAACGTTATTAGAGACGCAGTCACTTATACCGAACACGCAAAGAGAAAG 63664 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || || || || | ||| | |||||||||||||| | ||||| | | |||| ||| Sbjct 63665 ACCGTTACTTCTCTAGATGTTGTCTATGCATTGAAGAGACAAGGTAGAACCCTTTACGGT 63724 Query 16688 TTTGGAAGTTA 16698 ||||| |||| Sbjct 63725 TTTGGTGGTTA 63735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074962280180