Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10 190 5e-43 seq24 179 1e-39 >seq10 Length=365393 Score = 190 bits (210), Expect = 5e-43 Identities = 496/748 (66%), Gaps = 20/748 (3%) Strand=Plus/Minus Query 22214 TTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTG 22273 ||||||| ||||||||| | | || |||||||| ||| ||| |||| ||||| Sbjct 100186 TTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAGAATTTCT 100127 Query 22274 CATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAA 22333 || ||| ||||| |||||||| | |||||||||||| | ||||| ||||| |||| Sbjct 100126 CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTATGATGGAAA 100067 Query 22334 ATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGAAC 22393 | |||| ||||||| |||||| | || | | | | | ||||| | | ||| Sbjct 100066 ACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATCCAAAGGAA- 100008 Query 22394 AACGAAA-CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGG 22452 | ||| ||||||| || ||| || || | || || ||| | ||||| || ||| Sbjct 100007 AGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAGGAAAAGGCCGAATGG 99948 Query 22453 GCGCTGAAATGGATGAACAATGAACGTTCATTC---GCGGAACGTCTTATTGCATTTGCT 22509 || | |||||||| || || | |||| || || | | | ||||||||| Sbjct 99947 GCTTTAAAATGGATTGCAGATAAAGATGCATTGTTTGCAGAGAGGTTGGTGGCATTTGCT 99888 Query 22510 GTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGT 22569 | |||||||| |||||||| ||||| ||||| | ||||| ||| | ||||| | Sbjct 99887 GCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTGAAAAAGAGA 99828 Query 22570 GCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCAT 22629 | | ||||| ||| | ||||| || || ||| | ||| | ||||||| ||| | ||| Sbjct 99827 GGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAAGGTTTACAT 99768 Query 22630 ACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATG---AA 22686 ||||||||||| ||| |||| | | ||| | | |||| ||| | | || Sbjct 99767 ACCGATTTTGCTTGTTTGCTCTTT---TCACATTTGAACCATA---CCCCAGACGAAAAA 99714 Query 22687 ACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCG 22746 | ||| | || ||||| | || ||||| ||||| || | || || Sbjct 99713 ATTGTCAGACAAATCATTACCGAAGCCGTTGATATTGAAAAGAGATACTTCACTGACGCC 99654 Query 22747 TTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTT 22806 |||| || | | | ||||| ||| || | ||| || ||| | | |||||| Sbjct 99653 CTACCTGTCAACTTGCTCGGTATGAATAAGGATTTGATGTGTCAGTATGTCGAGTTTGTT 99594 Query 22807 GCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTT---AATCCA 22863 |||||| | ||| | ||| || | |||| || |||| ||| ||| |||| |||||| Sbjct 99593 GCAGATAGACTACTGATTGCATTAGGTTGTGAAAAG--GTAT-ACGACGTTACAAATCCA 99537 Query 22864 TTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTT 22923 || || | ||||| ||||| |||| || || || || || |||||||| ||||| Sbjct 99536 TTCGACTTTATGGAGAACATTTCCCTTGCTGGTAAAACAAACTTTTTCGAAAAGAGAGTC 99477 Query 22924 GGTGAATACCAAAAAGCAGGTGTTATGG 22951 || |||||||| |||||||| |||| Sbjct 99476 TCAGACTACCAAAAGGCAGGTGTCATGG 99449 >seq24 Length=140564 Score = 179 bits (198), Expect = 1e-39 Identities = 723/1120 (65%), Gaps = 38/1120 (3%) Strand=Plus/Plus Query 363091 GGTCTATATGATGGTGTTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACT 363150 ||| | |||||||||||||||||||| | |||| ||| | || | |||||||| || Sbjct 86707 GGTGTTTATGATGGTGTTACAACTGTCGAATTAGATAATTTAGCTGCTGAAACTGCTGCT 86766 Query 363151 TATCTGACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCT 363210 ||| |||| | | ||||| ||||| | | |||||||| | ||||| |||| Sbjct 86767 TATATGACAACTATCCATCCAGATTATGCGGTATTGGCTGCTAGAGTTGCAATTTCAAAC 86826 Query 363211 CTTCATAAAATGACATCAAATAAGTTTTCCAGTGTCATGGATAGTCTGTATAACTATGTC 363270 | || || ||| | || || || || || | || || |||| ||| | Sbjct 86827 TTACAAAAGCAAACAACTAAGAAATTCTCTGAAGTTGTTAATCAACTATATACTTATATT 86886 Query 363271 AATACAAAGACCGGTAAGTGGTCACCACTCATTGCCGATGACATTATTGAATGTATCCGT 363330 || | || | ||||| | ||| | ||| | | || | | ||| | ||| Sbjct 86887 GATCCTAAAAATGGTAAACCTGCTCCAATGATTTCAAAGGAGACTTGGGAAATTGTCCAA 86946 Query 363331 TCTAATGCGGAAGTTTTCGATGACGTTATCAATTATGAGAAGGATCTCGAGTATGA-TAT 363389 |||||| | | || ||||| | || ||||||| | || || | ||| | ||| Sbjct 86947 AAAAATGCGAATATATTAGATGATGCAATTCATTATGATAGAGACTTCAATTATAACTAT 87006 Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGA 363449 ||| || | || || | || | || || | | || |||||| | |||| ||| Sbjct 87007 TTT-GGTTTCAAAACATTAGAAAGGAGTTATCTTTTAAGAATAAATGGTAAGATTGCTGA 87065 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | | || || ||| | ||||| | ||||| ||||||| ||| | ||| ||||| | Sbjct 87066 AAGGCCCCAACATTTAATAATGAGAGTTGCCGTTGGTATTCATGGTGATGATATTGATTC 87125 Query 363510 CGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 | |||||||| ||||| | || ||| | || | ||||| || || | |||| Sbjct 87126 TGTTATTGAAACTTATAATTTGATGTCAAAGAG---GTAT-TTCACACATGCTTCTCCAA 87181 Query 363566 CAATGTACAATGCTGGAACTC---GTAATCCACAGATGTCTTCTTGCTTTCTTC-TAAAA 363621 | | | |||| | || |||| | |||| | |||||||| || |||||| | | Sbjct 87182 CTCTTTTCAATTCGGGTACTCCAAGAAATCAA---ATGTCTTCATG-TTTCTTAGTTGCA 87237 Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||||||||||||||| || ||||||| ||| || | || | |||||| | |||||| Sbjct 87238 ATGAAGGACGATTCCATTGAAGGTATCTATGATACTTTGAAAGAATGTGCTTTGATTTCC 87297 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG----TTA 363737 || | ||| || || ||||| || || || ||| || | | ||| | ||| Sbjct 87298 AAAACTGCTGGTGGTATTGGGTTACATATACATAATATTAGATC----AACTGGTTCTTA 87353 Query 363738 CATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||| ||| || | || | | || |||||| | |||| ||| || | || ||| | | Sbjct 87354 TATTGCCGGTACTAATGGTACA-TCCAATGGGATTATTCCAATGATTAGGGTCTTTAATA 87412 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | ||||| ||||| || ||||| ||||| | |||| | || |||||||| | || Sbjct 87413 ACACTGCAAGGTATGTTGACCAAGGTGGTAATAAAAGACC--TGGTGCGTTTGCACTATA 87470 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 | | |||||| ||| | |||||| |||| ||| |||| || |||||||| || || Sbjct 87471 TATTGAGCCTTGGCATTCAGATATTCTTGATTTTATTGATATCAGGAAAAACCACGGTAA 87530 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| ||| | | ||| | ||| | ||| ||| | ||| || |||| |||||| | Sbjct 87531 AGAAGAAATTAGAGCAAGAGATTTATTCCCTGCTTTATGGATTCCTGATTTATTTATGGA 87590 Query 363975 GCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 | || ||| | | | ||||| | |||| | ||| ||| || ||| | Sbjct 87591 AAGAGTTGAGAAAAATGAAGATTGGACTTTCTTCTCCCCTAGTGAAGCACCTGGTTTGAG 87650 Query 364035 CGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATG-AATCGGAGGGAAA 364091 ||||||| ||||| || | | | ||||| ||| |||| || | ||| | | Sbjct 87651 TGATGTATATGGTGATGAATTCAAAGAATTATATACCAAA--TATGAAAGAGAAGGTAGA 87708 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 ||| | | |||||| ||||| ||| |||||| | | ||| | || | || | ||| Sbjct 87709 GGC-AGGAGAACAATTAAAGCACAAAAGTTATGGTATTCGATCTTAGAAGCTCAAACTGA 87767 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 || || ||||| | ||||| || || ||| | || ||| Sbjct 87768 AACTGGTACACCTTTCATGTTATATAAGGATGCATGTAAC 87807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349258203320