Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 334 8e-87 seq17 87.8 2e-12 seq35 82.4 9e-11 >seq10 Length=365393 Score = 334 bits (370), Expect = 8e-87 Identities = 552/779 (71%), Gaps = 37/779 (5%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || |||||| || ||||| || | |||||| |||||||||| |||||| || || Sbjct 99579 CAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAG 99638 Query 92977 -AAGACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTC 93034 ||| | |||||||| ||||| || ||| | ||||| || || |||||||||| | Sbjct 99639 CAAGTTG-ACAGGTAGGGCGTCAGTGAAGTATCTCTTT-TCAATATCAACGGCTTCGGTA 99696 Query 93035 AAGATTTCTATTACTCTACTATTTGGT---GGTTTTTGTACGACATAATTGT----ACAT 93087 | ||||| | | || | | ||| || || | | || | || ||| | | Sbjct 99697 ATGATTTGTCTGACAAT--TTTTTCGTCTGGGGTATGGTTC-----AAATGTGAAAAGAG 99749 Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 || || ||||| ||||||||||||||||| |||| | |||| ||| ||| ||| || Sbjct 99750 CAAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGT 99809 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 |||||||| | || |||| || || | ||| || || || ||||| |||||| || Sbjct 99810 CAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAA 99869 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-C 93266 || |||||||| || || ||||||||||| | | || ||||| ||| ||| | Sbjct 99870 GAAAATACCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATC 99929 Query 93267 TGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 ||| ||||||||||||||||| ||||| |||| ||| ||||| || | |||||| || | Sbjct 99930 TGCA-ATCCATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTG 99988 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | || |||| | | || | || | | |||| ||||| ||||| || || | ||||| Sbjct 99989 CATTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGAAT 100048 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | |||| ||||| | || ||||| ||||||||| || ||||||||| |||| || | Sbjct 100049 AAGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTCTG 100108 Query 93447 TGATCTGCACTT--CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 || || || | ||||||||| |||| || | ||||||||||||||||||||| || Sbjct 100109 GAATTTGAACATCACTTGAGAAA--TTCTCAACTAAATTTTCATTGACTATACCATCAGA 100166 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG-----TTTCTCATCATC-TTTAAG 93558 || ||||| || || || | || | | ||||| | | |||| || || || Sbjct 100167 AGCAGCAAAGAACGC---TAGA-ACTCT-TGAAATGAAGAATCTTTCATTTTCGTTCAAT 100221 Query 93559 C--TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | || | |||||| | |||||| || ||||| | ||| || ||||||| || ||| Sbjct 100222 CTATTGTTCCAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGAT 100281 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 |||||||| || |||||||| | ||| || || ||||| | |||||||| | ||||| Sbjct 100282 GCTTCTGCCTTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAAGAGAACAAA 100340 >seq17 Length=202669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 136272 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 136213 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTG--GAATTTTT 126366 ||||||||||||| ||| ||||| | || ||| ||||| || Sbjct 136212 TTCGAACCCCACAGCTGTCAAATATTTTTTTGCTGAATTATT 136171 >seq35 Length=68242 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| ||||||||||||||||||||| ||| || | | ||||| | |||| ||||||| Sbjct 44317 CAGCTTGGCCGAGTGGTCTAAGGCGTCAGGTTAAGGTCCTGGTCTCTTCGGAGGCGTGGG 44376 Query 126328 TTCGAACCCCACACCTGACA 126347 ||||||||||||| ||| || Sbjct 44377 TTCGAACCCCACAGCTGTCA 44396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858990202400