Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 168 6e-37 seq115 156 4e-33 seq11 156 4e-33 seq1 114 1e-20 >seq2 Length=717657 Score = 168 bits (186), Expect = 6e-37 Identities = 184/244 (75%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 22203 TTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCT 22262 ||||||| || ||||||||||||||||| || || ||||||||||| || | || | Sbjct 277592 TTATACA---GTCAAGATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTT 277536 Query 22263 TGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG 22322 ||||| ||| | | || ||| | ||| || |||| ||||| || ||||| ||||| || Sbjct 277535 AGAAGTTGAATCTTCTGACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGG 277476 Query 22323 TATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 ||||||||| || |||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 277475 TATTCCACCTGACCAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAAC 277416 Query 22383 CGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 | ||||| |||||||| ||||| ||||| ||| | || || || ||| ||||| | || Sbjct 277415 TTTATCCGACTACAACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGG 277356 Query 22443 AGGT 22446 ||| Sbjct 277355 TGGT 277352 >seq115 Length=8510 Score = 156 bits (172), Expect = 4e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||||||||||||||| ||||| || | || | ||||| || | Sbjct 1708 AAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCA 1767 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| || |||| ||||| ||||||||||| ||||||||||| || Sbjct 1768 TCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGAC 1827 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | ||||| ||||| || || || ||||| ||| | || | || || ||| Sbjct 1828 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTAC 1887 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||||||| ||||| || | || ||||| ||| |||| Sbjct 1888 AACATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATT 1928 >seq11 Length=336598 Score = 156 bits (172), Expect = 4e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||||||||||||||| ||||| || | || | ||||| || | Sbjct 5150 AAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCA 5091 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| || |||| ||||| ||||||||||| ||||||||||| || Sbjct 5090 TCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGAC 5031 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | ||||| ||||| || || || ||||| ||| | || | || || ||| Sbjct 5030 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTAC 4971 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||||||| ||||| || | || ||||| ||| |||| Sbjct 4970 AACATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATT 4930 >seq1 Length=782669 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 231595 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 231536 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||||||||||||||| || || Sbjct 231535 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 231476 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 231475 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 231416 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 231415 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 231368 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 231367 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 231308 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 231307 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 231248 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 231247 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 231188 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 231187 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 231140 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 231823 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 231764 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 231763 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 231704 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 231703 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 231644 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 231643 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 231596 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 231139 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 231080 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 231079 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 231020 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 231019 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 230960 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || || || || || || | || || |||||| |||| Sbjct 230959 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATT 230922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726669986900