Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq115 102 8e-17 seq11 102 8e-17 seq1 102 8e-17 seq2 93.3 4e-14 >seq115 Length=8510 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | ||| ||||| || | | || |||||||||||||||||||| | Sbjct 1937 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1878 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||| ||||| | | |||| || | |||||||| || || Sbjct 1877 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 1818 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| || | |||| || | ||||| | ||||| || Sbjct 1817 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTG-TCGATAGTGTCAGATGACTCGAC 1759 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | |||||| |||||||| ||||| Sbjct 1758 TTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 1711 >seq11 Length=336598 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | ||| ||||| || | | || |||||||||||||||||||| | Sbjct 4921 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 4980 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||| ||||| | | |||| || | |||||||| || || Sbjct 4981 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 5040 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| || | |||| || | ||||| | ||||| || Sbjct 5041 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTG-TCGATAGTGTCAGATGACTCGAC 5099 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | |||||| |||||||| ||||| Sbjct 5100 TTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCAT 5147 >seq1 Length=782669 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || || | | |||||||| || ||||||||||| Sbjct 231369 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 231428 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| ||||||||||| | | || || | ||| ||||| || || Sbjct 231429 AGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGA 231488 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 231489 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTG-TCAATGGTGTCGGATGACTCCAC 231547 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || || || ||||| |||||||| Sbjct 231548 CTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || || | | |||||||| || ||||||||||| Sbjct 231141 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 231200 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| ||||||||||| | | || || | ||| ||||| || || Sbjct 231201 AGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGA 231260 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 231261 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCACC 231320 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || ||||| |||||||| Sbjct 231321 TCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || || | | |||||||| || ||||||||||| Sbjct 231597 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 231656 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| ||||||||||| | | || || | ||| ||||| || || Sbjct 231657 AGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGA 231716 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 231717 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCACC 231776 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || ||||| |||||||| Sbjct 231777 TCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | |||||| || || | | |||||||| || ||||||||||| Sbjct 230913 CCACCTCTTAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 230972 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| ||||||||||| | | || || | ||| ||||| || || Sbjct 230973 AGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGA 231032 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 231033 ATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCACC 231092 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || ||||| |||||||| Sbjct 231093 TCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231139 >seq2 Length=717657 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || || || | | | || |||||||| |||||||||||| Sbjct 277353 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 277412 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | ||| ||||| | | |||| || | |||||||| || || Sbjct 277413 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 277472 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| ||||| || | |||| || | |||||| | || || || Sbjct 277473 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTG-TCGATGGTGTCAGAAGATTCAAC 277531 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || | || || |||||||| ||||| Sbjct 277532 TTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCAT 277579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260787147200