Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq10 284 2e-71 seq115 154 2e-32 seq11 154 2e-32 seq2 127 3e-24 >seq10 Length=365393 Score = 284 bits (314), Expect = 2e-71 Identities = 600/885 (68%), Gaps = 26/885 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| ||| |||| | || ||||| || ||||| || || | | || || Sbjct 99460 GCCTTTTGGTAGTCTGAGACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATG 99519 Query 17921 AAATTCATAAAATCAAATGGATTAGTG--GTTTTATAATATTTTTCTTGTATTAATTCGT 17978 | |||||| || |||||||| || || |||| ||||| |||| | Sbjct 99520 TTCTCCATAAAGTCGAATGGATTTGTAACGTCGTATACC--TTTTCACAACCTAATGCAA 99577 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 | || ||||||||| ||||| |||||||| || |||||||||| ||||||||| | Sbjct 99578 TCAGTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGA 99637 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTT 18097 | | ||| |||||| || ||| | | || ||||| || || ||||| | || | Sbjct 99638 GCAAGTTGACAGGTAGGGCGTCAGTGAAGTATCTCTTT-TCAATATCAACGGCTTCGGTA 99696 Query 18098 ATTATGTTTATTACCCTAGATT----TTGGCAATTTATTAATTATGTGATTATAATATAA 18153 || || | | | || | || | || || | || |||||| | | | Sbjct 99697 ATGATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAA--ATGTGA-----AAAGAG 99749 Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 ||||| |||||||| || ||||||||||||||||| | || | ||||| ||||| Sbjct 99750 CAAACAAGCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGT 99809 Query 18214 TAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAA 18273 || || ||||| | |||||| ||||| | ||| || || ||||| || || ||| || Sbjct 99810 CAAACCTGGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAA 99869 Query 18274 GAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTG 18331 ||| ||||| ||||| ||| || || || | || || || ||||| | || || | | Sbjct 99870 GAAAATACCTTCAACAGCA-GCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTAT 99928 Query 18332 CT-CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 || || ||||||||| |||||||| | | ||||| || || | || || Sbjct 99929 CTGCA--ATCCATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAAT 99986 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||||| || || || |||| || | |||||| || ||||| || || || ||||| Sbjct 99987 TGCATTGAATAAGAATTCACTTTCCTTTGGATCTTTGATGTAAGTATCAATCAATAAAGA 100046 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||| |||| ||||| ||| ||||||| || || || | ||| || || ||||||| Sbjct 100047 ATAAGTTTCCGAATGAATGTTTTCCATCATAATTTGGAACCCATAGAAACATTTAGCCTC 100106 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 ||| ||||| || || | || | || || ||||| ||||| |||||||| |||| Sbjct 100107 TGGAATTTGAACATCACTTGAGAAATTCTCAACTAAATTTTCATTGACTATACCATCAGA 100166 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATT 18627 || || || || || | ||| | |||||| | ||||||| || || | ||| Sbjct 100167 AGCAGCAAAGAACGCTAGAACTCTTGAAATGAAGAATCTTTCATTTTCGTTCAATCTATT 100226 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 |||||| |||| | |||||| || ||||||| ||| |||| ||||| ||||||| ||| Sbjct 100227 GTTCCAATCATGCAAATCTTTGGAGAGATCAATTTCCTCCGCAGTCCAGAAAGATGCTTC 100286 Query 18688 GGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 |||| |||||||||| |||| || | || | || ||||| Sbjct 100287 TGCCTTCTTGTACATTTGCCAAATTTCGTGATACTTGATTGGAAA 100331 >seq115 Length=8510 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||| |||||||| ||| ||||||| || ||||| || |||||||| ||||||||||| Sbjct 1707 TAAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTC 1766 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||| | ||| || || || |||||| ||||| || ||||| || || || || Sbjct 1767 ATCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGA 1826 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||| | || | ||| |||||||| | |||||| |||||||| || || || Sbjct 1827 CCAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTA 1886 Query 155999 TAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 1887 CAACAT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 1939 >seq11 Length=336598 Score = 154 bits (170), Expect = 2e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||| |||||||| ||| ||||||| || ||||| || |||||||| ||||||||||| Sbjct 5151 TAAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTC 5092 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||| | ||| || || || |||||| ||||| || ||||| || || || || Sbjct 5091 ATCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGA 5032 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||| | || | ||| |||||||| | |||||| |||||||| || || || Sbjct 5031 CCAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTA 4972 Query 155999 TAATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || |||| | | || ||||| ||||| || ||||||||||| |||| Sbjct 4971 CAACAT-TCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATTAAGAGGTGGTG 4919 >seq2 Length=717657 Score = 127 bits (140), Expect = 3e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | || || || || || || || ||||| |||||||| ||| | Sbjct 277582 AAGATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCT 277523 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || || || || | || || |||||||| ||||| || || || || Sbjct 277522 TCTGACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGAC 277463 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | || | ||| |||||||| | |||||| ||||||||||| || || Sbjct 277462 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTAC 277403 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | ||||||| || | || ||||| || || || ||||| ||||| ||| Sbjct 277402 A--ACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGGT 277352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869621416000