Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10 170 3e-37 seq115 149 1e-30 seq11 149 1e-30 seq2 132 9e-26 seq1 89.7 9e-13 >seq10 Length=365393 Score = 170 bits (188), Expect = 3e-37 Identities = 366/542 (68%), Gaps = 9/542 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| || || ||| | |||||||||||||||||||| || | | || || Sbjct 99463 TTTTGGTAGTCTGAGACTCTCTTTTCGAAAAAGTTTGTTTTACCAGCAAGGGAAATGTTC 99522 Query 38892 TTCATAAAATCAAATGGATTTTTG--GTATTATAATATTTTTCTCCTATCAATACATATA 38949 | |||||| || ||||||||| | || |||| ||||| | ||| || | Sbjct 99523 TCCATAAAGTCGAATGGATTTGTAACGTCGTATACC--TTTTCACAACCTAATGCAATCA 99580 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 || |||||| || ||||| || ||||| || |||| || || ||||||||| | | Sbjct 99581 GTAGTCTATCTGCAACAAACTCGACATACTGACACATCAAATCCTTATTCATACCGAGCA 99640 Query 39010 ATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | || | |||| || ||| | || | |||||| | || || || |||| |||| Sbjct 99641 AGTTGACAGGTAGGGCGTCAGTGAAGTATCTCTTTT-CAATATCAACGGCTTCGGTAATG 99699 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 || | | | | |||| | ||| || | ||| | | | || ||||| Sbjct 99700 ATTTGTCTGACAATTTTTTCGTCTGGGGTATGGTTCAAATGT---GAAAAGAGCAAACAA 99756 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| |||||||||||||| || ||| | || | || || || || || ||| Sbjct 99757 GCAAAATCGGTATGTAAACCTTCATCTCTACAAATCAGCTCGTTGGAGAACGTCAAACCT 99816 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| || ||||||||||| | ||| || || |||||||| || ||| ||||| ||| Sbjct 99817 GGCATCAAACCTCTCTTTTTCAACCAGAAGATGGATGCAAATGAACCAGAGAAGAAAATA 99876 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||| |||||||| | | || || |||||| | | | |||| |||| Sbjct 99877 CCTTCAACAGCAGCAAATGCCACCAACCTCTCTGCAAACAATGCATCTTTATCTGCAATC 99936 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || |||| ||||| || || |||| |||||| | || || |||| || || || ||| Sbjct 99937 CATTTTAAAGCCCATTCGGCCTTTTCCTTGATACATGGGATTGTTTCAATTGCATTGAAT 99996 Query 39369 AA 39370 || Sbjct 99997 AA 99998 >seq115 Length=8510 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || ||||| || | ||||| || || ||| || Sbjct 1946 TTCTTACCACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 1887 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || || ||||| ||||| ||||| || | ||| |||||| Sbjct 1886 TAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGG 1827 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| |||||| || ||||| ||||| || || Sbjct 1826 TCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGAT 1767 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || ||||||| ||||| || ||||||||||| ||||||| || || ||||| ||| Sbjct 1766 GACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 1707 >seq11 Length=336598 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || ||||| || | ||||| || || ||| || Sbjct 4912 TTCTTACCACCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTG 4971 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || || ||||| ||||| ||||| || | ||| |||||| Sbjct 4972 TAGTCAGACAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGG 5031 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| |||||| || ||||| ||||| || || Sbjct 5032 TCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGAT 5091 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || ||||||| ||||| || ||||||||||| ||||||| || || ||||| ||| Sbjct 5092 GACTCGACTTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 5151 >seq2 Length=717657 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || || || | |||| || || || || || Sbjct 277347 ATGATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAG 277406 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || || ||||| ||||| ||||| || | ||| ||||||||| Sbjct 277407 TCGGATAAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCA 277466 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| |||||||| || || | || ||||| || || || || ||| Sbjct 277467 GGTGGAATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAGAAGAT 277526 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||| |||||||| ||||| ||||| || || | || || ||||| || Sbjct 277527 TCAACTTCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCTT 277582 >seq1 Length=782669 Score = 89.7 bits (98), Expect = 9e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | || | ||| || || || || || Sbjct 231594 ATACCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 231653 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | |||| || | |||||||||||| ||||| | |||||| ||||| ||| Sbjct 231654 GAGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGT 231713 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || |||||| || || || || || || Sbjct 231714 GGAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCC 231773 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 || || | || || ||||| || |||| ||| || | || |||||||||| Sbjct 231774 ACCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCATTT 231825 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | |||||||||||| ||||| | |||||| ||||| ||||| || || || | Sbjct 230983 CGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCT 231042 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || || || || || |||||| || || || || || || || || | || | Sbjct 231043 TGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGA 231102 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || |||| ||| || | || |||||||| Sbjct 231103 TTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | || | ||| || || || || || Sbjct 231138 ATACCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 231197 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | | |||| || | |||||||||||| ||||| | |||||| ||||| ||| Sbjct 231198 GAGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGT 231257 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || |||||| || || || || || || Sbjct 231258 GGAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCC 231317 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || ||||| || |||| ||| || | || |||||||| Sbjct 231318 ACCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 231367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133058308000