Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq24 255 1e-62 seq10 131 4e-25 seq11 87.8 4e-12 >seq24 Length=140564 Score = 255 bits (282), Expect = 1e-62 Identities = 584/869 (67%), Gaps = 19/869 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||||||||||||||||||| | ||| | |||| | | | | ||||| |||| Sbjct 87002 ACTATTTTGGTTTCAAAACATTAGAAAGGAGTTATCTTTTAAGAATAAATGGTAAGATTG 87061 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||| | || ||||| | | | | ||||| ||||||||||||| |||||||| Sbjct 87062 CTGAAAGGCCCCAACATTTAATAATGAGAGTTGCCGTTGGTATTCATGGTGATGATATTG 87121 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 | ||||||||||| |||| || | | || ||| || |||| |||||| | Sbjct 87122 ATTCTGTTATTGAAACTTATAATTTGAT--GTCAAAG---AGGTATTTCACACATGCTTC 87176 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAG 110535 ||| || || || || | || ||| || ||| || |||| || |||||| | | Sbjct 87177 TCCAACTCTTTTCAATTCGGGTACTCCAAGAAATCAAATGTCTTCATG-TTTCTTAGTTG 87235 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTT 110595 ||| || || ||||| ||||||||||| |||||| || | |||||| |||| | |||| Sbjct 87236 CAATGAAGGACGATTCCATTGAAGGTATCTATGATACTTTGAAAGAATGTGCTTTGATTT 87295 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | |||| |||| || ||||| | || | ||| ||||| | |||| || | ||| Sbjct 87296 CCAAAACTGCTGGTGGTATTGGGTTACATATACATAATATTAGATCAACTGGTTCTTATA 87355 Query 110656 TCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACA 110715 | || | || ||| | || | ||| || |||||||| | || ||||| || ||| Sbjct 87356 TTGCCGGTACTAATGGTACATCCAATGGGATTATTCCAATGATTAGGGTCTTTAATAACA 87415 Query 110716 CTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCG 110772 |||||| ||||| | |||||||| ||| ||| ||| | ||||| | ||| | | Sbjct 87416 CTGCAAGGTATGTTGACCAAGGTGGTAATAAAAGACCTGGTGCGTTTGCACTATATATTG 87475 Query 110773 AACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAG 110832 | ||||||||||||||||| |||| || | || | | ||||| || || |||| Sbjct 87476 AGCCTTGGCATTCAGATATTCTTGATTTTATTGATATCAGGAAAAACCACGGTAAAGAAG 87535 Query 110833 AACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTG 110892 || |||||| | |||||||| ||| | |||||| | |||||||| ||| || | | Sbjct 87536 AAATTAGAGCAAGAGATTTATTCCCTGCTTTATGGATTCCTGATTTATTTATGGAAAGAG 87595 Query 110893 TTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATG 110952 || | |||||| ||| || | | | ||| | | |||||| | ||||| Sbjct 87596 TTGAGAAAAATGAAGATTGGACTTTCTTCTCCCCTAGTGAAGCACCTGGTTTGAGTGATG 87655 Query 110953 TATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA-AGTTTCGC 111011 ||||||| | || || |||| | || |||||||||| |||||| | || | Sbjct 87656 TATATGGTGATGAATTCAAAGAATTATATACCAAATATGAAAGAGAAGGTAGAGGCAGGA 87715 Query 111012 AAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGA 111071 ||| |||| ||| ||| | | |||| ||| | ||| | ||| ||||||||| Sbjct 87716 GAAC-AATTAAAGCACAAAAGTTATGGTATTCGATCTTAGAAGCTCAAACTGAAACTGGT 87774 Query 111072 ACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGG 111130 || |||| || || ||||| ||| ||| ||| |||||||||||| ||||| || Sbjct 87775 ACACCTTTCATGTTATATAAGGATGCAT-GTAACAAGAAATCTAATCAACAAAATTTGGG 87833 Query 111131 AACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || || ||| ||||| ||||||| Sbjct 87834 TGTTATCAAATCTTCCAATTTATGCTGTG 87862 >seq10 Length=365393 Score = 131 bits (144), Expect = 4e-25 Identities = 467/718 (65%), Gaps = 23/718 (3%) Strand=Plus/Minus Query 131432 CTATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTC 131491 || |||||||| || ||||||| ||| | ||||| ||||| | | || | ||| Sbjct 100334 CTCTTTCCAATCAAGTATCACGAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTC 100275 Query 131492 TGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTG 131551 ||||||| || || || ||| | |||||||| | |||||||| || ||| | ||| Sbjct 100274 TGGACTGCGGAGGAAATTGATCTCTCCAAAGATTTGCATGATTGG-AACAATAGA--TTG 100218 Query 131552 AATGAAAA----AGATTTTG--TTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGC 131605 || ||||| ||||| | |||| | |||||| || ||||| || | |||||| Sbjct 100217 AACGAAAATGAAAGATTCTTCATTTCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGT 100158 Query 131606 ATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAAT--TGATATTCCTGAAGTAA 131663 || || | ||||||| | ||| |||||| ||||| || | | ||||| || | | Sbjct 100157 ATAGTCAATGAAAATTTAGTTGAGAATTTC--TCAAGTGATGTTCAAATTCCAGAGGCTA 100100 Query 131664 CATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTAT 131723 || ||||| || ||| | ||| |||||| || | ||||| |||| Sbjct 100099 AATGTTTCTATGGGTTCCAAATTATGATGGAAAACATTCATTCGGAAACTTATTCTTTAT 100040 Query 131724 TGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATT---ATTTGATGCTGTAA 131780 ||||||| | | | ||| || | | || || | |||| ||| |||| | Sbjct 100039 TGATTGATACTTACATCAAAGATCCAAAGGA---AAGTGAATTCTTATTCAATGCAATTG 99983 Query 131781 ATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATT 131840 | | | | || || || | || || ||||||||| | ||||||||| |||| | Sbjct 99982 AAACAATCCCATGTATCAAGGAAAAGGCCGAATGGGCTTTAAAATGGATTGCAGATAAAG 99923 Query 131841 CCGCTAATTTTTCTACA-AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCA 131899 || | | ||| | | || | || || |||||| |||||||||||| ||||| || Sbjct 99922 ATGC-ATTGTTTGCAGAGAGGTTGGTGGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCT 99864 Query 131900 GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 ||| | || | ||||| ||| | || ||| | || |||||||| || | | || Sbjct 99863 GGTTCATTTGCATCCATCTTCTGGTTGAAAAAGAGAGGTTTGATGCCAGGTTTGACGTTC 99804 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTAT 132019 ||||| | | || | |||||||||| || ||||| || |||||| || ||| | Sbjct 99803 TCCAACGAGCTGATTTGTAGAGATGAAGGTTTACATACCGATTTTGCTTGTTTGCTCTTT 99744 Query 132020 AGAAAATTTGCTGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTT 132079 | | || ||| | || ||||| | | | | |||| | || | |||||| ||| Sbjct 99743 TCACATTTGAACCATACCCCAGACGAAAAAATTGTCAGACAAATCATTACCGAAGCCGTT 99684 Query 132080 GATATCGAGAAGGAGTTTATT-ACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT 132136 ||||| || || ||| | || || || || | ||| ||| ||| | || |||||| Sbjct 99683 GATATTGA-AAAGAGATACTTCACTGACGCCCTACCTGTCAACTTGCTCGGTATGAAT 99627 >seq11 Length=336598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||| | || |||||| ||| | |||||| | || || || | ||||| |||||| Sbjct 244878 CATTTAATGGATAATGATCCGGTGTTATTCAATCGTCAGCCTTCTTTACATAAGATGTCT 244937 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTG 305426 |||||| ||| | |||||||| ||| | ||| ||||| || | ||| || | Sbjct 244938 ATGATGTGTCACAGGGTCAAAGT--TATGCCATATTCCACATTCAGAATGAATTTATCCG 244995 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | ||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||||| Sbjct 244996 TTACATCACCTTACAATGCTGATTTCGATGGTGATGAAATGAACTTGCATGTTCCTCAAT 245055 Query 305487 CAAAGGTTACAATGACTGAATTATCAGAAATATGTTCTGTATCAAAACTTATCATTTCTC 305546 | | | || | ||||| |||| || | ||| | || | | |||||||||| Sbjct 245056 CTTACGAAACCAGAGCTGAACTATCCGAGCTTTGTGCGGTTCCTTTGCAGATCATTTCTC 245115 Query 305547 C 305547 | Sbjct 245116 C 245116 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT-CA 304947 ||||||||| |||| || | ||||||||||| |||||||| |||||| ||| || Sbjct 244464 CAATATCATGTTGCTACTTATATGGATAATGATATTGCTGGTCAGCCGCAGGC-TCTACA 244522 Query 304948 AAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTAT 305007 | ||| || ||||| | || |||||| || |||| ||||||||||||||| | Sbjct 244523 GAAATCAGGTAGACCGATCAAATCTATTAGAGCTCGTCTTAAGGGTAAAGAGGGTCGTTT 244582 Query 305008 TCGAGGTAATCTAATGGGAAAACGTGTTGATTTT 305041 ||||||| | ||||| || | ||||||||| Sbjct 244583 GAGAGGTAACTTGATGGGTAAGAGAGTTGATTTT 244616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808846429860