Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 141 2e-28 seq115 114 3e-20 seq11 114 3e-20 >seq2 Length=717657 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || || || || ||||| ||| ||||||||| | Sbjct 277571 TTTTGTCAAGACCTTAACCGGTAAGACCATTACCTTAGAAGTTGAATCTTCTGACACCAT 277512 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||||||||||| ||||| || ||||| ||| || ||| |||||||| Sbjct 277511 CGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCACCTGACCAACAAAGACT 277452 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| || || ||||| || |||||||| || ||||| |||| |||||| |||| || Sbjct 277451 TATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTATCCGACTACAACATCCAAAA 277392 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| |||||| | || |||||| Sbjct 277391 GGAATCTACCCTTCACTTGGTCTTGAGA 277364 >seq115 Length=8510 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || || ||||| || |||||||| |||| Sbjct 1726 AAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCTGACACTATCGACAAT 1785 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || ||| |||||||||||||| Sbjct 1786 GTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGACTTATCTTT 1845 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| || |||||| | || |||||| | || || || ||| Sbjct 1846 GCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAGGAATCT 1905 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 1906 ACTCTTCACTTAGTCTTGAGA 1926 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||||||| || || || | || ||||||| |||||| || || Sbjct 1926 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 1867 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| | ||||| || || |||||||| | |||||| Sbjct 1866 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTG 1828 >seq11 Length=336598 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || || || ||||| || |||||||| |||| Sbjct 5132 AAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCATCTGACACTATCGACAAT 5073 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || ||||| ||| || ||| |||||||||||||| Sbjct 5072 GTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAACAAAGACTTATCTTT 5013 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| || |||||| | || |||||| | || || || ||| Sbjct 5012 GCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAGGAATCT 4953 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | || |||||| Sbjct 4952 ACTCTTCACTTAGTCTTGAGA 4932 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||||||| || || || | || ||||||| |||||| || || Sbjct 4932 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 4991 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| | ||||| || || |||||||| | |||||| Sbjct 4992 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTG 5030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816863059460