Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24 250 3e-61 seq5 89.7 6e-13 >seq24 Length=140564 Score = 250 bits (276), Expect = 3e-61 Identities = 916/1412 (65%), Gaps = 43/1412 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| || ||||| || | |||||| ||| || || | ||||| || Sbjct 88494 GTTGACAATCTGGAATTCACCGGCTAAAACTCTTCTAGAGTAAATATTGGAAGTGTAAGG 88435 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 |||||||||||| || | ||| | ||||| | || || || || ||||||||||| | Sbjct 88434 TTCAAAGCATTCGTTGTAACCTAGAATTTGAGATGTTGAAGCAGTCGGCATTGGTGCAAC 88375 Query 110788 CA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | || || | | | || || || ||||||| ||||| | ||||||||| Sbjct 88374 AAGCAATGAATTTCTCAAA--CCATTGGCCTTGATTTTCTCCTTTAATGAATCCCAGTCA 88317 Query 110846 TAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || |||||| | ||| |||| | |||||||| || | |||||||| || Sbjct 88316 TA--TAAG-TTGGTTGGCTTCTTACCCCAAAGATCAAACTGTAGGAGACCTTGGGATGCA 88260 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA--GCCAATTCACAGCTCGCCT 110960 ||||| || ||||| || ||||| | || | | ||| | |||||| || |||| Sbjct 88259 GGAGATCCTTCAAAAGTCTCATATGGTCCATC--CCTCATGGATAATTCAACACTTGCCT 88202 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 ||| | || ||||| ||||||||||| || || ||||| ||||| ||||| | Sbjct 88201 CCAAAGCAGCATGATAAATGGTTTCAAAAATTTGAATATTCAGTTCCTTTGCTTCTGGCG 88142 Query 111021 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 111080 ||||||||| | | ||| || || |||| || | |||||| ||||| | | ||| Sbjct 88141 AATCAAATGGTAATCTCAACATCATGAAGGCATCTGCCAAACCTTGGACACCAACAGCAA 88082 Query 111081 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 111140 | ||||||| || |||||| || ||| ||||| ||||| ||||| | ||||| || | Sbjct 88081 TTGGTCTGTTTCTCATATTTGATCTTCTTGCAGTTTCAACAGGATAGTAGTTTCTATCGA 88022 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA----- 111195 ||| | || | ||||| || |||| |||||| |||||||| | || ||| | Sbjct 88021 TGATTTTATTCAAGTTTTTAGTCACAACCTTTGTAATTTCATGTAACTTCTCAAAGTTAT 87962 Query 111196 ATCAAAAGTGCGAGTC-TC---TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 111251 | ||| ||| | ||| || |||| ||| | || | || | || |||| Sbjct 87961 ACCAACAGTTCTTGTCATCACTTTCA---ACAAATGCAGGCAATGCAACACTAGCTAAAT 87905 Query 111252 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAAC 111311 | ||||| || || || || || || || | |||||| ||||| |||||| Sbjct 87904 TACAAACTGCTGTTTCCTCAGGTGATGAATATTCAACAATTTCACAGCATAAATTGGAAG 87845 Query 111312 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCA 111371 || || |||||||| | ||| ||| |||||||| || |||||||| || | || Sbjct 87844 ATTTGATAACACCCAAATTTTGTTGATTAGATTTCTTGTTACATGCATCCTTATATAACA 87785 Query 111372 TGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCT 111430 || | || || || || || || || | || | || | | ||| ||| | | | Sbjct 87784 TGAAAGGTGTACCAGTTTCAGTTTGAGCTTCTAAGATCGAATACCATAACTTTTG----T 87729 Query 111431 GGTACAATGG--CGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | | ||| | | ||| | ||| | | || || || || || | ||| || Sbjct 87728 GCTTTAATTGTTCTCCTGCCTCTACCTTCTCTTTCATATTTGGTATATAATTCTTTGAAT 87669 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTG 111546 || ||||| | || | ||| |||| ||| || || |||| | || ||| | Sbjct 87668 TCATCACCATATACATCACTCAAACCAGGTG-CTTCACTAGGGGAGAAGAAAGTCCAATC 87610 Query 111547 ACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATC 111606 || || |||||| | | ||| || | || |||||||| | | | || | ||| Sbjct 87609 TTCATTTTTCTCAACTCTTTCCATAAATAAATCAGGAATCCATAAAGCAGGGAATAAATC 87550 Query 111607 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 111666 ||| | | ||||| | ||| ||||| | | |||| || || | ||||| Sbjct 87549 TCTTGCTCTAATTTCTTCTTTACCGTGGTTTTTCCTGATATCAATAAAATCAAGAATATC 87490 Query 111667 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGAT 111722 | ||||| ||||||| ||| | ||| | | || |||| | ||| |||| | Sbjct 87489 TGAATGCCAAGGCTCAATATATAGTGCAAACGCACCAGGTCTTT-TATTACCACCTTGGT 87431 Query 111723 TTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGAC 111782 ||||| | || ||| ||||| || | || |||||||||||| |||| ||| || Sbjct 87430 CAACATACCTTGCAGTGTTATTAAAGACCCTAATCATTGGAATAATCCCATTGGATGTAC 87371 Query 111783 CATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATAC 111842 |||| || || |||| ||| | | | ||| | || ||| || || | |||||||| Sbjct 87370 CATTAGTACCGGCAATATAAGAACCAGTTGATCTAATATTATGTATATGTAACCCAATAC 87311 Query 111843 CCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 | ||||| || || || ||||| || | | ||| |||||||||| | || | Sbjct 87310 CACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTATCATAGATACCTTCAATGG 87251 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 | || ||||| | || | | ||| || ||||| || |||||| ||||| | || Sbjct 87250 AATCGTCCTTCATTGCAACTAAGAAACATGAAGACATTTGATTTCTTGGAGTACCCGAAT 87191 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCC 112021 |||| || ||||| | || || |||| |||||| | |||||| | || || || Sbjct 87190 TGAAAAGAGTTGGAGAAGCATGTGTGAA-ATACCTCTTTGACATCAAATTATAAGTTTCA 87132 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 | ||||||||||| || || || || || || Sbjct 87131 ATAACAGAATCAATATCATCACCATGAATACC 87100 >seq5 Length=581968 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/414 (65%), Gaps = 5/414 (1%) Strand=Plus/Plus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 || || |||||||| | |||||| | || | || || | | || || |||||| Sbjct 332838 ATTTTACGATCAAATCTACCCGGTCTTAGCAAAGCTGGGTCCAAAACGTCAACACGATTA 332897 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 || | |||| ||| |||| | ||| | ||| |||||||| ||| || | Sbjct 332898 GTACCTGCAAAAACAACAACATGATCGTCAGACTTAAATCCATCCATTTCGACTAGAAGC 332957 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT-TGC-- 11620 ||||| | || | |||||| |||||||| || |||||| | | | | | || Sbjct 332958 TGATTTAAGGTGTTTTCTCTTTCATCATTACCTCCCATACCTCTTCCCTTTCCTCTGGAT 333017 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | ||||| || ||||||| ||| |||||| ||||| |||||| | || | Sbjct 333018 TTTCCGATAGCATCGATTTCATCAACGAAAACAATAGATGGTGCATTTTCTCTTGCAGTC 333077 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | || ||||| | | ||||| |||||||||||||| |||||||| | | Sbjct 333078 TTGAACAACTCACGAACACGTGACGCACCAACACCAACAAACATTTCCACAAATTCAGAA 333137 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 |||| || | | ||| || || || |||||| || ||||| || || | || Sbjct 333138 CCAGA-AACAGAGTAGAACGGAACCCCTGCTTCACCAGCAGTGGCTTTAGCAAGTAACGT 333196 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||| | || || ||||| |||||||| || || Sbjct 333197 TTTACCTGTACCGGGTGGACCATTTAAAATAGCACCTCGAGGGATCTTTGCGCC 333250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029958896000