Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F001983325.1_202017-02-02] 260 sequences; 11,679,144 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq115 136 9e-27 seq11 136 9e-27 seq1 131 4e-25 >seq2 Length=717657 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | |||||| || || || ||||||||||| || || | | || || || Sbjct 277364 TCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 277423 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| ||||| |||||||| | |||||||||||| |||| |||||||| Sbjct 277424 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTT 277483 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||||||||| || || || |||||||||||||| |||||| || | || || Sbjct 277484 ATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAGAAGATTCAACTTCTAAGGTAAT 277543 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | ||||| ||||| | ||||| || Sbjct 277544 GGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCTT 277582 >seq115 Length=8510 Score = 136 bits (150), Expect = 9e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| || || ||||| ||||| || || | | || || || Sbjct 1926 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 1867 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| ||||| |||||||| | |||||||||||| |||| |||||||| Sbjct 1866 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTT 1807 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || || ||||| |||||||| || || || | || || Sbjct 1806 GTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACTTCTAAGGTAAT 1747 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| || || | ||| || ||||| | ||||| ||| Sbjct 1746 AGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 1707 >seq11 Length=336598 Score = 136 bits (150), Expect = 9e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| || || ||||| ||||| || || | | || || || Sbjct 4932 TCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 4991 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | ||||| ||||| |||||||| | |||||||||||| |||| |||||||| Sbjct 4992 ATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGAATACCTTCCTT 5051 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || || ||||| |||||||| || || || | || || Sbjct 5052 GTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACTTCTAAGGTAAT 5111 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 ||||| || || | ||| || ||||| | ||||| ||| Sbjct 5112 AGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTTA 5151 >seq1 Length=782669 Score = 131 bits (144), Expect = 4e-25 Identities = 163/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||| || |||| || ||||| || || || || || Sbjct 231620 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTG 231679 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| ||||| | || ||||| || |||| || ||||||||||||||||| Sbjct 231680 TTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTT 231739 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || || ||||| | ||||| || || || || Sbjct 231740 CGACTTGACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGT 231799 Query 211091 GAGAGTCTTTACAAACACCTGCATTT-TATGGTTACTTGATG 211131 || ||||| ||||| | |||||||| ||| ||| || ||| Sbjct 231800 TAGTGTCTTGACAAAGATCTGCATTTCTATAGTTGGTTTATG 231841 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||| || |||| || ||||| || || || || || Sbjct 230936 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTG 230995 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| ||||| | || ||||| || |||| || ||||||||||||||||| Sbjct 230996 TTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTT 231055 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || || ||||| | ||||| || || || || Sbjct 231056 CGACTTGACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGT 231115 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 231116 TAGTGTCTTGACAAAGATCTGCAT 231139 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||| || |||| || ||||| || || || || || Sbjct 231164 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTG 231223 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| ||||| | || ||||| || |||| || ||||||||||||||||| Sbjct 231224 TTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTT 231283 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || || ||||| | ||||| || || || || Sbjct 231284 CGACTTGACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGT 231343 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 231344 TAGTGTCTTGACAAAGATCTGCAT 231367 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || |||||||| || |||| || ||||| || || || || || Sbjct 231392 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTG 231451 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||| ||||| | || ||||| || |||| || ||||||||||||||||| Sbjct 231452 TTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTT 231511 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || || ||||| | ||||| || || || || Sbjct 231512 CGACTTGACATTGTCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGT 231571 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | |||||| Sbjct 231572 TAGTGTCTTGACAAAGATCTGCAT 231595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148138574900