Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F002166775.1_202017-06-05] 11 sequences; 10,910,993 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 221 3e-52 seq5 140 7e-28 seq4 131 4e-25 seq1 109 1e-18 >seq7 Length=736534 Score = 221 bits (244), Expect = 3e-52 Identities = 432/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Plus Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729 ||||| |||||| | ||| || ||| || ||||| | |||||||| || || Sbjct 706752 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 706808 Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||| |||| | || ||||| ||||||| || ||| | ||| Sbjct 706809 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 706868 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846 || || | || || |||||||| ||| | ||| | || |||||| || || Sbjct 706869 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 706928 Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906 || |||| ||||| ||||| | | ||||||||| || || |||||| |||| ||| Sbjct 706929 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 706988 Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 || |||| |||| | || || ||||| || || | |||||| || || ||||| || Sbjct 706989 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 707046 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | || | |||| || |||||||| || | ||| Sbjct 707047 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 707106 Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 ||| | |||| || || ||| | | || ||| || ||| | | | |||| Sbjct 707107 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAAGAAAAG 707165 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140 | |||||||| | |||||||| |||| | || || | ||| ||||| || Sbjct 707166 GCCGAATGGGCCTTAAAATGGATTGCAGATAAAGATGCATTGTTTGCAGAGAGGTTGGTG 707225 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || ||||| ||||| |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 707226 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 707285 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 || || ||||| | |||||||| || || ||||| ||||| |||| | || || ||| Sbjct 707286 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 707345 Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| ||| || |||||||| Sbjct 707346 GGTTTACATACCGATTTTGCTTGTTT 707371 >seq5 Length=1193180 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| || | |||||||| || ||||| || |||||||| Sbjct 1151962 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1151903 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| || Sbjct 1151902 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 1151843 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || || || | || ||||| || | || || | || || Sbjct 1151842 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 1151783 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||||||||||||||| | ||||| ||||| || ||||| || Sbjct 1151782 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 1151733 >seq4 Length=1293945 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 737913 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 737972 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 737973 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738032 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 738033 ACATTGTCAATGGTGTCGGACGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738092 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 738093 TTGACAAAGATCTGCAT 738109 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 738368 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738427 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 738428 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738487 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 738488 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738547 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 738548 TTGACAAAGATCTGCAT 738564 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 738596 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738655 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 738656 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738715 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 738716 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738775 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 738776 TTGACAAAGATCTGCAT 738792 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 738824 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738883 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 738884 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738943 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 738944 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739003 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 739004 TTGACAAAGATCTGCAT 739020 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 739052 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 739111 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 739112 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 739171 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 739172 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739231 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 739232 TTGACAAAGATCTGCAT 739248 Score = 127 bits (140), Expect = 5e-24 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 738141 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738200 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || ||||| || || || || || || || || ||||| ||||| | || Sbjct 738201 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738260 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||| |||| | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 738261 ACA-TTTCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738319 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 738320 TTGACAAAGATCTGCAT 738336 Score = 125 bits (138), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || |||||||| ||||||||||| ||| Sbjct 739480 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 739539 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || || || || || || || || || || || ||||| ||||| | || Sbjct 739540 GCGAAAATAAGTCT-TGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 739598 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || ||||| | ||| || || || || || ||||| Sbjct 739599 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739658 Query 104543 TTTACAAATATCTGCATTT 104561 || ||||| |||||||||| Sbjct 739659 TTGACAAAGATCTGCATTT 739677 >seq1 Length=2559104 Score = 109 bits (120), Expect = 1e-18 Identities = 128/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 165104 GATGAATGGAATACTTGGAATAAAAT-ACACGATCCTGTTTTACATATAGAGCTAAGAAG 165162 |||||||||| | ||||||||| | ||| |||||||| || |||||||||||||||| Sbjct 2232928 GATGAATGGAGTTCTTGGAATATCAGGACA-GATCCTGTGTTGCATATAGAGCTAAGAAA 2232986 Query 165163 ATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGC-TA 165221 |||||||||||| | | || || || |||| ||||| | ||| || || || | Sbjct 2232987 ATGGGCAGATATTTTAATTATTGCCCCTCTAACGGCAAATACTTTGAGTAAAATTGCATT 2233046 Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 | ||| | ||| |||| |||||||| | | |||||||||||||||| Sbjct 2233047 AGGGT-TGTGTGATAATTTGTTAACTAATGTTGTTAGAGCGTGGAATA 2233093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398237724788