Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F002166775.1_202017-06-05]
11 sequences; 10,910,993 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq7 221 3e-52
seq5 140 7e-28
seq4 131 4e-25
seq1 109 1e-18
>seq7
Length=736534
Score = 221 bits (244), Expect = 3e-52
Identities = 432/626 (69%), Gaps = 18/626 (3%)
Strand=Plus/Plus
Query 268673 GAACCGCTTTTA---GTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT 268729
||||| |||||| | ||| || ||| || ||||| | |||||||| || ||
Sbjct 706752 GAACCACTTTTAAAGGAAAACAAG--AGA-AGGTTTGTTCTCTTTCCAATCAAGTATCAC 706808
Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789
|| || ||| |||||||| |||| | || ||||| ||||||| || ||| | |||
Sbjct 706809 GAAATTTGGCAAATGTACAAGAAGGCAGAAGCATCTTTCTGGACTGCGGAGGAAATTGAT 706868
Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATA 268846
|| || | || || |||||||| ||| | ||| | || |||||| || ||
Sbjct 706869 CTCTCCAAAGATTTGCATGATTGGAACAATAGATTGAACGAAAATGAAAGATTCTTCATT 706928
Query 268847 TCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG 268906
|| |||| ||||| ||||| | | ||||||||| || || |||||| |||| |||
Sbjct 706929 TCAAGAGTTCTAGCGTTCTTTGCTGCTTCTGATGGTATAGTCAATGAAAATTTAGTTGAG 706988
Query 268907 AAGTTCTGTCAAGAG--GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964
|| |||| |||| | || || ||||| || || | |||||| || || ||||| ||
Sbjct 706989 AATTTCT--CAAGTGATGTTCAAATTCCAGAGGCTAAATGTTTCTATGGGTTCCAAATTA 707046
Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024
|| ||||| |||||||| || | || | |||| || |||||||| || | |||
Sbjct 707047 TGATGGAAAACATTCATTCGGAAACTTATTCTTTATTGATTGATACTTACATCAAAGATC 707106
Query 269025 ACAACGAAAAGAAAAGACT-ATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083
||| | |||| || || ||| | | || ||| || ||| | | | ||||
Sbjct 707107 -CAAAGGAAAGTGAATTCTTATTCAATGCAATTGAAACAATCCCATGTATCAAAGAAAAG 707165
Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTT 269140
| |||||||| | |||||||| |||| | || || | ||| ||||| ||
Sbjct 707166 GCCGAATGGGCCTTAAAATGGATTGCAGATAAAGATGCATTGTTTGCAGAGAGGTTGGTG 707225
Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200
|| ||||| ||||| |||||||| ||||| || || || ||||| | ||||| ||||||
Sbjct 707226 GCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCATTTGCATCCATCTTCTGGTTG 707285
Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260
|| || ||||| | |||||||| || || ||||| ||||| |||| | || || |||
Sbjct 707286 AAAAAGAGAGGTTTGATGCCAGGTTTGACGTTCTCCAACGAGCTGATTTGTAGAGATGAA 707345
Query 269261 GGTTTACACTGCGACTTCGCTTGTTT 269286
|||||||| ||| || ||||||||
Sbjct 707346 GGTTTACATACCGATTTTGCTTGTTT 707371
>seq5
Length=1193180
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | |||| || | |||||||| || ||||| || ||||||||
Sbjct 1151962 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1151903
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||||||| ||||||| ||| || || ||||| || || || ||||| ||||| ||
Sbjct 1151902 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 1151843
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || || || || || | || ||||| || | || || | || ||
Sbjct 1151842 ATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGACT 1151783
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|||| ||||||||||||||||| | ||||| ||||| || ||||| ||
Sbjct 1151782 TCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 1151733
>seq4
Length=1293945
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 737913 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 737972
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 737973 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738032
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 738033 ACATTGTCAATGGTGTCGGACGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738092
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 738093 TTGACAAAGATCTGCAT 738109
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 738368 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738427
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 738428 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738487
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 738488 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738547
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 738548 TTGACAAAGATCTGCAT 738564
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 738596 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738655
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 738656 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738715
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 738716 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738775
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 738776 TTGACAAAGATCTGCAT 738792
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 738824 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738883
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 738884 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738943
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 738944 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739003
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 739004 TTGACAAAGATCTGCAT 739020
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 739052 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 739111
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 739112 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 739171
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 739172 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739231
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 739232 TTGACAAAGATCTGCAT 739248
Score = 127 bits (140), Expect = 5e-24
Identities = 147/197 (75%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 738141 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 738200
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || ||||| || || || || || || || || ||||| ||||| | ||
Sbjct 738201 GCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 738260
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||| |||| | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 738261 ACA-TTTCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 738319
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 738320 TTGACAAAGATCTGCAT 738336
Score = 125 bits (138), Expect = 2e-23
Identities = 148/199 (74%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || || || |||||||| ||||||||||| |||
Sbjct 739480 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTCCTACCGTCCTCTAGTTGTTTACCA 739539
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || || || || || || || || || || || ||||| ||||| | ||
Sbjct 739540 GCGAAAATAAGTCT-TGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 739598
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| | || ||||| | ||| || || || || || |||||
Sbjct 739599 ACATTATCAATGGTGTCGGATGACTCCACCTCCAATGTGATTGTTTTGCCTGTTAGTGTC 739658
Query 104543 TTTACAAATATCTGCATTT 104561
|| ||||| ||||||||||
Sbjct 739659 TTGACAAAGATCTGCATTT 739677
>seq1
Length=2559104
Score = 109 bits (120), Expect = 1e-18
Identities = 128/168 (76%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 165104 GATGAATGGAATACTTGGAATAAAAT-ACACGATCCTGTTTTACATATAGAGCTAAGAAG 165162
|||||||||| | ||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct 2232928 GATGAATGGAGTTCTTGGAATATCAGGACA-GATCCTGTGTTGCATATAGAGCTAAGAAA 2232986
Query 165163 ATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATAGC-TA 165221
|||||||||||| | | || || || |||| ||||| | ||| || || || |
Sbjct 2232987 ATGGGCAGATATTTTAATTATTGCCCCTCTAACGGCAAATACTTTGAGTAAAATTGCATT 2233046
Query 165222 ACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269
| ||| | ||| |||| |||||||| | | ||||||||||||||||
Sbjct 2233047 AGGGT-TGTGTGATAATTTGTTAACTAATGTTGTTAGAGCGTGGAATA 2233093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398237724788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |