Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F002166775.1_202017-06-05] 11 sequences; 10,910,993 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 168 6e-37 seq5 156 4e-33 seq4 111 1e-19 >seq6 Length=742668 Score = 168 bits (186), Expect = 6e-37 Identities = 184/244 (75%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 22203 TTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCT 22262 ||||||| || ||||||||||||||||| || || ||||||||||| || | || | Sbjct 86539 TTATACA---GTCAAGATGCAAATTTTTGTCAAGACCTTAACCGGTAAGACCATTACCTT 86595 Query 22263 TGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGG 22322 ||||| ||| | | || ||| | ||| || |||| ||||| || ||||| ||||| || Sbjct 86596 AGAAGTTGAATCTTCTGACACCATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGG 86655 Query 22323 TATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 ||||||||| || |||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 86656 TATTCCACCTGACCAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAAC 86715 Query 22383 CGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 | ||||| |||||||| ||||| ||||| ||| | || || || ||| ||||| | || Sbjct 86716 TTTATCCGACTACAACATCCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGG 86775 Query 22443 AGGT 22446 ||| Sbjct 86776 TGGT 86779 >seq5 Length=1193180 Score = 156 bits (172), Expect = 4e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||||||||||||||||||||| ||||| || | || | ||||| || | Sbjct 1151733 AAGATGCAAATTTTTGTTAAAACTTTAACTGGTAAGACTATTACCTTAGAAGTCGAGTCA 1151792 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| || |||| ||||| ||||||||||| ||||||||||| || Sbjct 1151793 TCTGACACTATCGACAATGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCTGAC 1151852 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | ||||| ||||| || || || ||||| ||| | || | || || ||| Sbjct 1151853 CAACAAAGACTTATCTTTGCAGGTAAGCAATTAGAAGATGGTAGAACTTTGTCTGACTAC 1151912 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||||||| ||||| || | || ||||| ||| |||| Sbjct 1151913 AACATTCAAAAGGAATCTACTCTTCACTTAGTCTTGAGATT 1151953 >seq4 Length=1293945 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 739675 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 739616 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 739615 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 739556 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 739555 CAA-GACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 739497 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 739496 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 739449 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 738109 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCGTCC 738050 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||||||||||||||| || || Sbjct 738049 GACACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 737990 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 737989 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 737930 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 || || || || || || | || || |||||| |||| Sbjct 737929 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATT 737892 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 738564 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 738505 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 738504 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 738445 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 738444 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 738385 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 738384 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 738337 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 738792 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 738733 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 738732 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 738673 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 738672 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 738613 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 738612 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 738565 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 739020 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 738961 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 738960 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 738901 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 738900 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 738841 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 738840 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 738793 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 739248 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 739189 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 739188 GACACCATTGATAATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 739129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 739128 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 739069 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 739068 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 739021 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || |||| || ||||| |||| | || ||||| | || Sbjct 738336 ATGCAGATCTTTGTCAAGACACTAACAGGCAAAACAATCACATTGGAGGTGGAGTCATCC 738277 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||||||||||||||| || || Sbjct 738276 GACACCATTGAA-ATGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 738218 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||||| ||||||| | || |||| || |||||| Sbjct 738217 CAGAGACTTATTTTCGCTGGTAAACAACTAGAGGACGGTAGGACACTCTCGGACTACAAC 738158 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||| ||||| | || ||| Sbjct 738157 ATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGAGATTGAGAGGTGGT 738110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727943730215