Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F002166775.1_202017-06-05] 11 sequences; 10,910,993 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 129 6e-25 seq5 125 7e-24 seq4 96.9 4e-15 >seq6 Length=742668 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| || || ||||||||||| |||||||||||| Sbjct 86778 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAT 86719 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || |||||||| || | | || || || || || Sbjct 86718 AAAGTTCTACCATCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGGA 86659 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||||| ||||| ||| | ||||| || ||||| || Sbjct 86658 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATGGTGTCAGAAGATTCAACT 86599 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | |||||||| ||||||||||| || || || ||||||||||| ||| Sbjct 86598 TCTAAGGTAATGGTCTTACCGGTTAAGGTCTTGACAAAAATTTGCATCTTG 86548 >seq5 Length=1193180 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| | || ||| || | ||| || || ||||||||||||||||||||||| | | Sbjct 1151962 CCACCTCTTAATCTCAAGACTAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAC 1151903 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | || || |||||||| || | | || || || || || Sbjct 1151902 AAAGTTCTACCA-TCTTCTAATTGCTTACCTGCAAAGATAAGTCTTTGTTGGTCAGGTGG 1151844 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| ||||| ||| | ||||| || || || || Sbjct 1151843 AATACCTTCCTTGTCTTGGATTTTAGACTTGACATTGTCGATAGTGTCAGATGACTCGAC 1151784 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | ||||| || ||||| |||||||||||||| ||||||||||| || Sbjct 1151783 TTCTAAGGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATTTGCATCTT 1151733 >seq4 Length=1293945 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || ||||||||||| | Sbjct 737883 CCACCTCTTAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC--CG 737940 Query 134547 ACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 737941 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 738000 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| ||| | ||||||||||| |||| Sbjct 738001 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTGTCGGACGACTCCA 738060 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || |||| || || || || || ||||| Sbjct 738061 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 738109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 738111 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 738168 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 738169 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 738228 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCC 134663 | || || || || || || || || ||||| | |||| |||||||| || ||| Sbjct 738229 GAATACCCTCCTTGTCCTGGATCTTCGACTTGAC--ATTTCAATGGTGTCGGATGACTCC 738286 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || |||| || || || || || ||||| Sbjct 738287 ACCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 738336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 738338 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 738395 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 738396 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 738455 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| || |||| Sbjct 738456 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCA 738515 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || |||| || || || || || ||||| Sbjct 738516 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 738564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 738566 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 738623 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 738624 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 738683 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| || |||| Sbjct 738684 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCA 738743 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || |||| || || || || || ||||| Sbjct 738744 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 738792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 738794 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 738851 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 738852 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 738911 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| || |||| Sbjct 738912 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCA 738971 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || |||| || || || || || ||||| Sbjct 738972 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 739020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 739022 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 739079 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| | | |||||| || || | Sbjct 739080 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTG 739139 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| || |||| Sbjct 739140 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCA 739199 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || ||||| || |||| || || || || || ||||| Sbjct 739200 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCAT 739248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || ||| || | ||| ||||| || ||||| || |||||||||| || Sbjct 739450 CCACCTCTCAATCTCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGT--CCG 739507 Query 134547 ACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || ||||| || || ||||| || ||||| || || | Sbjct 739508 AGAGTGTCCTACCGTCCTCTAGTTGTTTACCAGCGAAAAT-AAGTCTTGCTGGTCTGGTG 739566 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || || || || ||||| || | |||||||| || |||| Sbjct 739567 GAATACCCTCCTTGTCCTGGATCTTCGACTTGACATTATCAATGGTGTCGGATGACTCCA 739626 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 | || | || || ||||| || |||| || || || || || ||||||| Sbjct 739627 CCTCCAATGTGATTGTTTTGCCTGTTAGTGTCTTGACAAAGATCTGCATTT 739677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398330507720