Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20kudriavzevii_20[genbank_20GCA_5F002166775.1_202017-06-05] 11 sequences; 10,910,993 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 242 5e-59 seq1 89.7 6e-13 >seq9 Length=441842 Score = 242 bits (268), Expect = 5e-59 Identities = 912/1410 (65%), Gaps = 39/1410 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| || ||||| || | |||||| ||| || || | ||||| || Sbjct 320442 GTTGACAATCTGGAATTCACCGGCTAAAACTCTTCTAGAGTAAATATTGGAAGTGTAAGG 320383 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 |||||||||||| || | ||| | ||||| | || || || || ||||||||||| | Sbjct 320382 TTCAAAGCATTCGTTGTAACCTAGAATTTGAGATGTTGAAGCAGTCGGCATTGGTGCAAC 320323 Query 110788 CA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | || || | | | || || || ||||||| ||||| | ||||||||| Sbjct 320322 AAGCAATGAATTTCTCAAA--CCATTGGCCTTGATTTTCTCCTTTAATGAATCCCAGTCA 320265 Query 110846 TAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || |||||| | ||| |||| | |||||||| || | |||||||| || Sbjct 320264 TA--TAAG-TTGGTTGGCTTCTTACCCCAAAGATCAAACTGTAGGAGACCTTGGGATGCA 320208 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 ||||| || ||||| || ||||| | || | || |||||| || |||||| Sbjct 320207 GGAGATCCTTCAAAAGTCTCATATGGTCCATCCCTAATAGATAATTCAACACTTGCCTCC 320148 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | | || ||||| ||||||||||| || || ||||| ||||| ||||| ||| Sbjct 320147 AAAGCAGCATGATAAATGGTTTCAAAAATTTGAATATTCAGTTCCTTTGCTTCTGGCGAA 320088 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||||| | | ||| || || |||| || | |||||| ||||| | | |||| Sbjct 320087 TCAAATGGTAATCTCAACATCATGAAGGCATCTGCCAAACCTTGGACACCAACAGCAATT 320028 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 ||||||| || |||||| || | | ||||| ||||| ||||| | ||||| || ||| Sbjct 320027 GGTCTGTTTCTCATATTTGATCTCCTTGCAGTTTCAACAGGATAGTAGTTTCTATCGATG 319968 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA-----AT 111197 | | || | ||||| || |||| |||||| |||||||| | || ||| | | Sbjct 319967 ATTTTATTCAAGTTTTTAGTCACAACCTTTGTAATTTCATGTAACTTCTCAAAGTTATAC 319908 Query 111198 CAAAAGTGCGAGTC-TC---TTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 ||| ||| | ||| || |||| ||| | || | || | || ||||| Sbjct 319907 CAACAGTTCTTGTCATCACTTTCA---ACAAATGCAGGCAATGCAACACTAGCTAAATTA 319851 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 ||||| || || || || || || || | |||||| ||||| |||||| Sbjct 319850 CAAACTGCTGTTTCCTCAGGTGATGAATATTCAACAATTTCACAGCATAAATTGGAAGAT 319791 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || |||||||| | ||| ||| |||||||| || |||||||| || | |||| Sbjct 319790 TTGATAACACCCAAATTTTGTTGATTAGATTTCTTGTTACATGCATCCTTATATAACATG 319731 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGG 111432 | || || || || || || || | || | || | | ||| ||| | | || Sbjct 319730 AAAGGTGTACCAGTTTCAGTTTGAGCTTCTAAGATCGAATACCATAACTTTTG----TGC 319675 Query 111433 TACAATGG--CGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | ||| | | ||| | ||| | | || || || || || | ||| || || Sbjct 319674 TTTAATTGTTCTCCTGCCTCTACCTTCTCTTTCATATTTGGTATATAATTCTTTGAATTC 319615 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGACCATTGAC 111548 ||||| | || | ||| |||| ||| || || |||| | || ||| | Sbjct 319614 ATCACCATATACATCACTCAAACCAGGTG-CTTCACTAGGGGAGAAGAAAGTCCAATCTT 319556 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 || || |||||| | | ||| || | || |||||||| | | | || | ||||| Sbjct 319555 CATTTTTCTCAACTCTTTCCATAAATAAATCAGGAATCCATAAAGCAGGGAATAAATCTC 319496 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCG 111668 | | | ||||| | ||| ||||| | | |||| || || | ||||| | Sbjct 319495 TTGCTCTAATTTCTTCTTTACCGTGGTTTTTCCTGATATCAATAAAATCAAGAATATCTG 319436 Query 111669 CGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTT 111724 ||||| ||||||| ||| | ||| | | || |||| | ||| |||| | Sbjct 319435 AATGCCAAGGCTCAATATATAGTGCAAACGCACCAGGTCTTT-TATTACCACCTTGGTCA 319377 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 ||||| | || ||| ||||| || | || |||||||||||| |||| ||| |||| Sbjct 319376 ACATACCTTGCAGTGTTATTAAAGACCCTAATCATTGGAATAATCCCATTGGATGTACCA 319317 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || |||| ||| | | | ||| | || ||| || || | ||||||||| Sbjct 319316 TTAGTACCGGCAATATAAGAACCAGTTGATCTAATATTATGTATATGTAACCCAATACCA 319257 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| || || || ||||| || | | ||| |||||||||| | || || Sbjct 319256 CCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTATCATAGATACCTTCAATGGAA 319197 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 || ||||| | || | | ||| || ||||| || |||||| ||||| | |||| Sbjct 319196 TCGTCCTTCATTGCAACTAAGAAACATGAAGACATTTGATTTCTTGGAGTACCCGAATTG 319137 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 || || ||||| | || || |||| |||||| | |||||| | || || || | Sbjct 319136 AAAAGAGTTGGAGAAGCATGTGTGAA-ATACCTCTTTGACATCAAATTATAAGTTTCAAT 319078 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCC 112053 ||||||||||| || || || || || || Sbjct 319077 AACAGAATCAATATCATCACCATGAATACC 319048 >seq1 Length=2559104 Score = 89.7 bits (98), Expect = 6e-13 Identities = 271/414 (65%), Gaps = 5/414 (1%) Strand=Plus/Minus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 || || |||||||| | |||||| | || | || || | | || || |||||| Sbjct 1530074 ATTTTACGATCAAATCTACCCGGTCTTAGCAAAGCTGGGTCCAAAACGTCAACACGATTA 1530015 Query 11504 GTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAAT 11563 || | |||| ||| |||| | ||| | ||| |||||||| ||| || | Sbjct 1530014 GTACCTGCAAAAACAACAACATGATCGTCAGACTTAAATCCATCCATTTCGACTAGAAGC 1529955 Query 11564 TGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGT-TGC-- 11620 ||||| | || | |||||| |||||||| || |||||| | | | | | || Sbjct 1529954 TGATTTAAGGTGTTTTCTCTTTCATCATTACCTCCCATACCTCTTCCCTTTCCTCTGGAT 1529895 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || | ||||| || ||||||| ||| |||||| ||||| |||||| | || | Sbjct 1529894 TTTCCGATAGCATCGATTTCATCAACGAAAACAATAGATGGTGCATTTTCTCTTGCAGTC 1529835 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | || ||||| | | ||||| |||||||||||||| |||||||| | | Sbjct 1529834 TTGAACAACTCACGAACACGTGACGCACCAACACCAACAAACATTTCCACAAATTCAGAA 1529775 Query 11741 GCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 |||| || | | ||| || || || |||||| || ||||| || || | || Sbjct 1529774 CCAGA-AACAGAGTAGAACGGAACCCCTGCTTCACCAGCAGTGGCTTTAGCAAGTAACGT 1529716 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||| | || || ||||| |||||||| || || Sbjct 1529715 TTTACCTGTACCGGGTGGACCATTTAAAATAGCACCTCGAGGGATCTTTGCGCC 1529662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031913645600