Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq183 116 4e-21 seq138 86.0 6e-12 >seq183 Length=27355 Score = 116 bits (128), Expect = 4e-21 Identities = 346/522 (66%), Gaps = 25/522 (5%) Strand=Plus/Plus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 ||||||| ||||||| || |||| | | |||| ||| ||||| | | ||||| Sbjct 26271 TCAACGCGATCGATAACATCCCGTGCATCAAGGAGAAGGCCGAGTGGGCGCTCAGATGGA 26330 Query 50387 CTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50445 || |||| | | | |||||| || || || |||||||||||| || || || Sbjct 26331 TCAACGACAAGGATGCGTTGTTTGGC-GAGCGCTTGGTGGCGTTTGCCGCCGTGGAGGGG 26389 Query 50446 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAA-AACCTTAGGCATAATGCC 50504 | || || || || ||||| | || || | | || || | ||| | ||||| Sbjct 26390 ATTTTCTTCTCGGGCTCGTTTGCGTCGATCTTCTGGTTGAAGAAGCGGGGGC-TCATGCC 26448 Query 50505 CGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGC 50564 |||| | ||||| ||||||||||| | || ||||| || ||||||| |||||||| Sbjct 26449 CGGCTTGACGTTCTCGAACGAGTTGATCTGTCGGGACGAGGGCTTGCACACCGACTTTGC 26508 Query 50565 GTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACAT 50624 || |||| | | ||| | | ||| | | | |||| || ||| | || Sbjct 26509 CTGCTTGTTGTTCT---CGCACCTGAATAACACCC---CGGACGAGACGATTGTCCGCAA 26562 Query 50625 GTTCAAA---GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGC 50681 | ||| || ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 26563 GATCATCACCGAGGCCGTTGATATCGAGAAGCGCTACTTCACTGACGCCTTGCCCGTCAA 26622 Query 50682 ATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATT 50741 ||||||||||||||| ||| |||||||| ||||| | |||||||| || ||| | || Sbjct 26623 CTTGTTGGGCATGAACAAGGACTTGATGTGCCAGTACGTCGAGTTTGTCGCCGACCGCTT 26682 Query 50742 G-TTGTTG----CAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTT 50795 | |||| | | |||| ||||| | |||| || | ||| ||||| || || Sbjct 26683 GTTTGTCGCCCTCGGCTGCGACAAGC-----ACTACAACGTCAC-CAACCCATTCGATTT 26736 Query 50796 TATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA 50837 ||| | ||||| ||| | | |||||||| ||||| ||||| Sbjct 26737 CATGGAGAACATTTCGCTTGCCGGCAAAACCAACTTCTTCGA 26778 >seq138 Length=17849 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||||||||| |||||||| ||| | Sbjct 9727 CCACCTCTCAATCTCAAGACCAAGTGTAAGGTTGATTCTTTTTGGATGTTGTAGTCGGAC 9668 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||| ||| | || || | |||||| || || || Sbjct 9667 AAAGTTCTACCATCTTCTAATTGCTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGTGGG 9608 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || ||||| || | | || | ||||| | | ||| ||| Sbjct 9607 ATACCTTCCTTATCTTGGATCTTTTGCTTGACATTATCGATAGTGTCAGAAGATTCGACT 9548 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || || || || || || |||||||| Sbjct 9547 TCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 9501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011091731040