Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq95 170 2e-37 seq30 143 3e-29 >seq95 Length=34527 Score = 170 bits (188), Expect = 2e-37 Identities = 444/669 (66%), Gaps = 12/669 (2%) Strand=Plus/Minus Query 47895 TTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952 ||||| ||||| || |||| || || || ||||| | || ||| ||| | || Sbjct 1666 TTACAGACAGCGACTTCATCGTTCGA--AGAATATTCGACAATCTCACAACACAAGTTGG 1609 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTA 48010 | ||||||| ||||||| || || || || ||| ||||||||||||||||||| Sbjct 1608 AAGATTTGATCATACCCAAGTTCTGTTGGTTGGATTTTG--TGTTACATGCGTCCTTGTA 1551 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA-AACAGTCC 48069 ||||| ||||| || || ||||| | || | ||| | ||| || | ||| ||| | Sbjct 1550 GAGCATGAAAGGAGTACCCGTTTCAGTTTGGGCTTCCAAGATCGAGTACCACAACTTTTG 1491 Query 48070 TAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129 | ||||| || |||| || | || || ||||||||| ||||||| || || | Sbjct 1490 T-GCCTTGATGGTCTTTCTACCTCTGTTTTCTCTTTCGTATTTTGTATATAGCTCTTCGA 1432 Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189 | || || || || || | || || || ||| | || | | | | ||| | Sbjct 1431 ACTCGTCACCGTAGACGTCGGACAAGCCTGGGACCTCACTTGGGGAGAAAAGAGTCCATT 1372 Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249 ||| || | | ||||| |||| || | || |||||||| | || || || | Sbjct 1371 CCTGATTCTGCTCAACTCTCTTCATGAACAAGTCAGGTATCCACAATGCAGGGAACAAGT 1312 Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATAT 48309 | || | ||| | |||||| || || ||| || | | || | ||||| | |||| Sbjct 1311 CTCTGGCTCTGATTTCTTCCTTACCGTGGTTCTTTCTCACGTCGATGAAGTCGAAGATAT 1252 Query 48310 CAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGAT 48369 | | |||||||| || | ||| | || | ||||||||| ||| ||||| ||||| | Sbjct 1251 CGGAGTGCCATGGCTCAAGATAGAGCGCAAAGGCACCTGGTCTTTTGTTACCACCTTGGT 1192 Query 48370 CTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATAC 48429 | | ||||||||| || ||||| |||| | | |||||| | ||||| || || ||| Sbjct 1191 CGACATATCTGGCCGTGTTGTTGAAAACACGCATCATTGGAATGATACCGTTGGAAGTAC 1132 Query 48430 CATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATA 48488 | ||||| || | ||| || || | ||||| || || || || || ||| ||| Sbjct 1131 CGTTGGTACCTGCAATGTAGGAGCCTGTGGCTCTGATGTTGTGGATGTGCAA-ACCAATA 1073 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 |||||||| | || || || || |||||| |||| | || || || || || || || Sbjct 1072 CCACCTGCGGTCTTGGAGATCAGCGCACACTGTTTCAAAGTGTCGTAGATACCCTCAATC 1013 Query 48549 CTATCATCT 48557 ||||||| Sbjct 1012 GAATCATCT 1004 >seq30 Length=26055 Score = 143 bits (158), Expect = 3e-29 Identities = 423/650 (65%), Gaps = 7/650 (1%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 ||| ||||||||||| |||||||| || || | || |||| | || |||||||| Sbjct 1884 TTTGGTTCGTAAATAGTACATACCTGTTTTGAGTCCCTTCTTCCACGCGTAAAAATGCAT 1943 Query 47069 ACTAGTTAATTTAGAATAACT-AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGAT 47127 || || ||||||||| | | | | ||| || | || ||| | | ||| |||| Sbjct 1944 GCTGGTCAATTTAGAAAAGGTGACATCCTGCAAGAACAA-ATTCATACTTTGTGATTGAT 2002 Query 47128 CAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATA 47187 ||| ||||| |||| || || |||||||||| ||| |||||||| ||| ||||||| Sbjct 2003 CAACAAATGGGGCTCTGTCTGCCGCCATATCTATTATAGTCCTTTGTGATATTTCCCATA 2062 Query 47188 CTGTTTTATAAATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTC 47244 |||||||||| | ||| || || ||| | || |||||||||| || || Sbjct 2063 CTGTTTTATACAACGCTTTGATTTCAGGTGGAATGGCTTTTATATTTTGAATGGACCCGT 2122 Query 47245 Cgttttctataattttgttttttaattcatttgacca-aagttttcgttcagttaatgtt 47303 | ||||| ||||| || ||||| | ||| | ||| ||| || | | ||| | Sbjct 2123 CATTTTCGATAATATTATTTTTCATATCAATACTCCATAAGCCAAGTTTAACTAAATCAT 2182 Query 47304 tttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATA 47363 ||| | ||| || | |||| |||||| |||| ||||| |||| ||||||| Sbjct 2183 CAACTAAG-TATTTATTGACTACTTGATGTTCTCCTGATAATACTCGACGGACATATATA 2241 Query 47364 TTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTA 47423 || |||| || || | ||||||| || | |||||| | ||||||||| || Sbjct 2242 TTGGATGTAATAGGCTCAAAGCATTCATTGAAACCGAGAATTTGGGAAGTTGATGCAGTT 2301 Query 47424 GGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNN 47483 ||||| | || || | ||| ||||| || ||| | | || ||| Sbjct 2302 GGCATCAAGGCGACAAGTAAAGAGTTTCTCACGCCAAACTGTTTTATGGTTTGTCTCAAA 2361 Query 47484 NGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543 | ||||||||| | |||||| || | || ||||| | |||| ||||||| | ||| Sbjct 2362 GTTGACCAATCCCATAAATCTGAAGGTATTACTTTCCACATATCAAATTGAAGCAAACCT 2421 Query 47544 TTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAA 47603 | || ||||| |||| || | || ||| || || || | ||||| Sbjct 2422 TGTGAAATGGGAGACCCATCGTAAGATTGATACTTCCCTCGGCTTTGTGCCAACTCACAG 2481 Query 47604 CTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | |||||| | || || || |||||||||||||| ||||| || Sbjct 2482 GATTGTTCCAAAGTTGCATGGTAAATGGTTTCAAATATTTTAATGTTGAG 2531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105132240080