Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12-
15] 522 sequences; 11,394,881 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq95 170 2e-37
seq30 143 3e-29
>seq95
Length=34527
Score = 170 bits (188), Expect = 2e-37
Identities = 444/669 (66%), Gaps = 12/669 (2%)
Strand=Plus/Minus
Query 47895 TTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952
||||| ||||| || |||| || || || ||||| | || ||| ||| | ||
Sbjct 1666 TTACAGACAGCGACTTCATCGTTCGA--AGAATATTCGACAATCTCACAACACAAGTTGG 1609
Query 47953 CACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTA 48010
| ||||||| ||||||| || || || || ||| |||||||||||||||||||
Sbjct 1608 AAGATTTGATCATACCCAAGTTCTGTTGGTTGGATTTTG--TGTTACATGCGTCCTTGTA 1551
Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA-AACAGTCC 48069
||||| ||||| || || ||||| | || | ||| | ||| || | ||| ||| |
Sbjct 1550 GAGCATGAAAGGAGTACCCGTTTCAGTTTGGGCTTCCAAGATCGAGTACCACAACTTTTG 1491
Query 48070 TAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129
| ||||| || |||| || | || || ||||||||| ||||||| || || |
Sbjct 1490 T-GCCTTGATGGTCTTTCTACCTCTGTTTTCTCTTTCGTATTTTGTATATAGCTCTTCGA 1432
Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189
| || || || || || | || || || ||| | || | | | | ||| |
Sbjct 1431 ACTCGTCACCGTAGACGTCGGACAAGCCTGGGACCTCACTTGGGGAGAAAAGAGTCCATT 1372
Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249
||| || | | ||||| |||| || | || |||||||| | || || || |
Sbjct 1371 CCTGATTCTGCTCAACTCTCTTCATGAACAAGTCAGGTATCCACAATGCAGGGAACAAGT 1312
Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATAT 48309
| || | ||| | |||||| || || ||| || | | || | ||||| | ||||
Sbjct 1311 CTCTGGCTCTGATTTCTTCCTTACCGTGGTTCTTTCTCACGTCGATGAAGTCGAAGATAT 1252
Query 48310 CAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGAT 48369
| | |||||||| || | ||| | || | ||||||||| ||| ||||| ||||| |
Sbjct 1251 CGGAGTGCCATGGCTCAAGATAGAGCGCAAAGGCACCTGGTCTTTTGTTACCACCTTGGT 1192
Query 48370 CTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATAC 48429
| | ||||||||| || ||||| |||| | | |||||| | ||||| || || |||
Sbjct 1191 CGACATATCTGGCCGTGTTGTTGAAAACACGCATCATTGGAATGATACCGTTGGAAGTAC 1132
Query 48430 CATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATA 48488
| ||||| || | ||| || || | ||||| || || || || || ||| |||
Sbjct 1131 CGTTGGTACCTGCAATGTAGGAGCCTGTGGCTCTGATGTTGTGGATGTGCAA-ACCAATA 1073
Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548
|||||||| | || || || || |||||| |||| | || || || || || || ||
Sbjct 1072 CCACCTGCGGTCTTGGAGATCAGCGCACACTGTTTCAAAGTGTCGTAGATACCCTCAATC 1013
Query 48549 CTATCATCT 48557
|||||||
Sbjct 1012 GAATCATCT 1004
>seq30
Length=26055
Score = 143 bits (158), Expect = 3e-29
Identities = 423/650 (65%), Gaps = 7/650 (1%)
Strand=Plus/Plus
Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068
||| ||||||||||| |||||||| || || | || |||| | || ||||||||
Sbjct 1884 TTTGGTTCGTAAATAGTACATACCTGTTTTGAGTCCCTTCTTCCACGCGTAAAAATGCAT 1943
Query 47069 ACTAGTTAATTTAGAATAACT-AGGTTCTGAAATATGAATATTAAGAGATTGACTCTGAT 47127
|| || ||||||||| | | | | ||| || | || ||| | | ||| ||||
Sbjct 1944 GCTGGTCAATTTAGAAAAGGTGACATCCTGCAAGAACAA-ATTCATACTTTGTGATTGAT 2002
Query 47128 CAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATA 47187
||| ||||| |||| || || |||||||||| ||| |||||||| ||| |||||||
Sbjct 2003 CAACAAATGGGGCTCTGTCTGCCGCCATATCTATTATAGTCCTTTGTGATATTTCCCATA 2062
Query 47188 CTGTTTTATAAATTTGTTTAATGTCTTCTGG---GAGATTAGTATTTTGAATAGATCCTC 47244
|||||||||| | ||| || || ||| | || |||||||||| || ||
Sbjct 2063 CTGTTTTATACAACGCTTTGATTTCAGGTGGAATGGCTTTTATATTTTGAATGGACCCGT 2122
Query 47245 Cgttttctataattttgttttttaattcatttgacca-aagttttcgttcagttaatgtt 47303
| ||||| ||||| || ||||| | ||| | ||| ||| || | | ||| |
Sbjct 2123 CATTTTCGATAATATTATTTTTCATATCAATACTCCATAAGCCAAGTTTAACTAAATCAT 2182
Query 47304 tttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATA 47363
||| | ||| || | |||| |||||| |||| ||||| |||| |||||||
Sbjct 2183 CAACTAAG-TATTTATTGACTACTTGATGTTCTCCTGATAATACTCGACGGACATATATA 2241
Query 47364 TTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTA 47423
|| |||| || || | ||||||| || | |||||| | ||||||||| ||
Sbjct 2242 TTGGATGTAATAGGCTCAAAGCATTCATTGAAACCGAGAATTTGGGAAGTTGATGCAGTT 2301
Query 47424 GGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNN 47483
||||| | || || | ||| ||||| || ||| | | || |||
Sbjct 2302 GGCATCAAGGCGACAAGTAAAGAGTTTCTCACGCCAAACTGTTTTATGGTTTGTCTCAAA 2361
Query 47484 NGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCT 47543
| ||||||||| | |||||| || | || ||||| | |||| ||||||| | |||
Sbjct 2362 GTTGACCAATCCCATAAATCTGAAGGTATTACTTTCCACATATCAAATTGAAGCAAACCT 2421
Query 47544 TTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAA 47603
| || ||||| |||| || | || ||| || || || | |||||
Sbjct 2422 TGTGAAATGGGAGACCCATCGTAAGATTGATACTTCCCTCGGCTTTGTGCCAACTCACAG 2481
Query 47604 CTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653
| |||||| | || || || |||||||||||||| ||||| ||
Sbjct 2482 GATTGTTCCAAAGTTGCATGGTAAATGGTTTCAAATATTTTAATGTTGAG 2531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105132240080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |