Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq120 241 1e-57 seq12 188 6e-42 seq69 154 1e-31 seq97 113 4e-19 seq138 107 2e-17 seq73 100 2e-15 >seq120 Length=74726 Score = 241 bits (266), Expect = 1e-57 Identities = 476/694 (69%), Gaps = 24/694 (3%) Strand=Plus/Minus Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 ||||||||||||| |||||||| || || | | || ||| | | |||||||| || | Sbjct 3910 TAAGAACTGCTTGTGAAAGAGCAAAGAGAACCTTGTCCTCTTCTGCACAAACCACCATCG 3851 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | || || || ||||| || ||||| ||| | || || | | || |||| ||| | Sbjct 3850 AAATTGACTCCTTGTTTGAAGGTATTGACTATTACACCTCTGTCACCAGAGCCAGATTCG 3791 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 |||| | ||| || | || ||| || | || ||||| ||| | ||||| | | Sbjct 3790 AAGAATTGTGTCAAGACTTGTTCAGATCTACCTTGGACCCAGTTGAAAAGGTTTTGAAGG 3731 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 | | ||| | || |||||| || ||||||| || ||||||||||| || || |||| Sbjct 3730 ACGCCAAGTTGGACAAATCCTCTGTCGATGAAATCGTCCTTGTTGGTGGTTCCACCAGAA 3671 Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAATGAAA 552204 |||| || | | ||| |||| ||| || ||||| ||||| || ||| || Sbjct 3670 TTCCAAAGGTCC---AAAAGTTAGTTTCCGACTACTTCAACGGTAAGGAACCAAAC--AA 3616 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || |||||||| |||||||| || ||||| || | ||||| || || | | Sbjct 3615 GTCCATCAACCCAGATGAAGCTGTTGCTTACGGTGCTGCTGTCCAAGCTGCCATCTTGAC 3556 Query 552263 TGG--ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 ||| || || | | || || ||| | | || | | ||||||||||| ||||| Sbjct 3555 TGGTGACCAA-TCCTCCAAGACC-CAAGACTTGTTATTATTGGATGTTACTCCATTATCT 3498 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 |||||| | ||||| | ||| ||| | ||||| || | || ||||| | ||||| Sbjct 3497 CTTGGTATTGAAACCGCTGGTGGTGTCATGACCAAGTTGATTCCAAGAAACTCCACTATC 3438 Query 552381 CCTTGTAAAAAATCTCGTGTATTT-TCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 || ||||| || ||| | | ||| ||||| || | || || ||| | | ||| || Sbjct 3437 CCATGTAAGAAGTCT-GAGACTTTCTCTACATACGCTGACAACCAACCAGGTGTCTTGAT 3379 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG----GTACTT 552495 ||| | |||||||| |||||| | || || || || ||||||| ||| | Sbjct 3378 CCAAGTCTTTGAAGGTGAAAGAGCAAGAACAAAGGACAA----CAACTTGTTGGGTAAGT 3323 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 || | ||| || |||||||| || || | || || || ||||||||||| || |||| Sbjct 3322 TTGAATTATCTGGCATTCCTCCAGCACCAAGAGGTGTTCCACAAATTGAAGTCACCTTCG 3263 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||||||||||||||| ||| ||||||| |||| Sbjct 3262 ATATCGATGCCAATGGTATTCTGAATGTTTCTGC 3229 Score = 125 bits (138), Expect = 6e-23 Identities = 357/542 (66%), Gaps = 10/542 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| |||||||| || || || ||||| | | | |||| | Sbjct 4683 AGCTGTCGGTATCGATTTAGGTACTACCTACTCCTGTGTCGCTCACTTCTCCAATGACAG 4624 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || |||||||| || |||||||||||||| ||||| || || || | ||||| Sbjct 4623 AGTCGACATCATTGCCAACGACCAAGGTAACAGAACCACTCCTTCCTACGTGGCCTTCAC 4564 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| || ||| || ||||||| || || || | || ||| | || || ||| Sbjct 4563 GGACACGGAAAGATTGATTGGTGACGCTGCCAAGAACCAGGCCGCCATGAACCCACACAA 4504 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| |||| || || || | || ||||| |||| || | || || || || | Sbjct 4503 CACTGTTTTCGACGCCAAGAGATTGATTGGTAGAAAGTTCGAAGACTCCGAGGTGCAAAC 4444 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 || |||||||| | |||||| | ||||| | ||| || || | ||| | | Sbjct 4443 CGACATGAAGCACTTCCCTTTCAAGATTGTCGACCAAGGTGGTAAGCCAAAGATTCAGGT 4384 Query 550290 CTACTCATGAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGTTTT 550347 | | | |||| | || ||||||| |||||| |||| || |||||| | || Sbjct 4383 CGAAT--ACAAGGGCGAGACCAA-GATTTTCACTCCAGAAGAAATCTCCTCTATGATCTT 4327 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGT--CAAGAAGTTACGGATGCAGTA 550405 | || |||| | |||| || |||| | ||| |||| || | || || || Sbjct 4326 GACCAAGATGAGAGAAACCGCTGAAGCTTACTTGGGTTGCAAG--GTCAACGACGCCGTT 4269 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| ||||| || || || ||||| ||| | ||||| || || ||||| || Sbjct 4268 GTCACTGTCCCAGCTTACTTCAACGACTCCCAAAGACAAGCCACCAAGGATGCCGGTTCC 4209 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 ||||| || | || ||| | | || ||||| ||||| ||||||||||| |||| || Sbjct 4208 ATTGCAGGTTTGAACGTTTTGAGAATCATCAACGAACCAACTGCTGCTGCCATTGCCTAC 4149 Query 550526 GG 550527 || Sbjct 4148 GG 4147 >seq12 Length=164003 Score = 188 bits (208), Expect = 6e-42 Identities = 452/676 (67%), Gaps = 22/676 (3%) Strand=Plus/Minus Query 551910 AGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAA 551969 ||||| ||||| |||||||| || || || | |||||| | | || || | |||||| Sbjct 74098 AGAACCGCTTGTGAAAGAGCAAAGAGAACTTTATCATCTTCTGCCCAGACATCAATTGAA 74039 Query 551970 GTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAA 552029 | || ||||| ||||| || || | | | |||| | || || | |||||| Sbjct 74038 ATCGACTCATTGTTTGAAGGTCAAGACTTCTACAGCTCTATCACTAGAGCTAGGTTTGAA 73979 Query 552030 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGAT 552089 || ||||| |||| | || ||| || | || ||||| ||| | ||||| | || Sbjct 73978 GAGCTTTGTGCTGACTTGTTCAGATCCACGCTGGACCCAGTCGAAAAGGTTTTGAAGGAC 73919 Query 552090 TCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATT 552149 || ||| | || || || | | |||||||| ||||||||||| ||||| |||||| Sbjct 73918 TCCAAGCTAGACAAGTCTTCTATTGAAGAAATTGTTCTTGTTGGTGGTTCTACCAGAATT 73859 Query 552150 CCTAAAATTCGCGAAATGTTAAGTTCTTATTTC---AATGGTAAAAAATTAAATGAAAGT 552206 || || | | ||| ||| ||| | ||| || ||||| || ||| |||| Sbjct 73858 CCAAAGGTGC---AAAAGTTGGTTTCGGACTTCTTCAACGGTAAGGAACCAAAC--AAGT 73804 Query 552207 G--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 | || |||||||| || ||||| || ||||| || | ||||| || || | ||| Sbjct 73803 CCATCAACCCAGATGAAGCCGTTGCTTACGGTGCAGCCGTCCAAGCTGCCATCTTAACTG 73744 Query 552265 G--ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 | || || | || || ||| ||| | | || | | |||||||| || |||| | Sbjct 73743 GTGACCAA-TCATCCAAGACT-CAAGACTTGTTATTATTGGATGTTACCCCATTATCCTT 73686 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | || || | ||| ||| | ||||| || | || ||||| | |||||||| Sbjct 73685 AGGTATTGAGACCGCTGGTGGTGTCATGACCAAGTTGATTCCAAGAAACTCCACTATTCC 73626 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 ||||| || ||| || || || ||| | ||||| ||| | | ||| ||||| Sbjct 73625 ATGTAAGAAGTCTGAAACTTTCTCAACTTATGCTGATAACCAACCAGGTGTCTTGATTCA 73566 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG----GTACTTTTA 552498 | | |||||||| |||||| | || || || || ||||||| ||| ||| Sbjct 73565 AGTCTTTGAAGGTGAAAGAGCAAAGACGAAGGACAA----CAACTTGTTGGGTAAGTTTG 73510 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | ||| || ||||| |||||||| | || || || ||||| ||||| |||||||||| Sbjct 73509 AATTATCCGGCATTCCACCTGCTCCAAGAGGTGTCCCACAAATCGAAGTCACTTTCGATA 73450 Query 552559 TCGATGCCAATGGAAT 552574 | ||||||||||| || Sbjct 73449 TTGATGCCAATGGTAT 73434 Score = 152 bits (168), Expect = 4e-31 Identities = 369/548 (67%), Gaps = 22/548 (4%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTG--TTTGGCAAAATGGT 550048 |||| | ||||| |||||||| || ||||| ||||| | |||| ||| || Sbjct 74879 AGCTGTCGGTATTGATTTAGGTACTACATACTCATGTGTGGCCCACTTTGCCAA--TGAC 74822 Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 | ||| || ||||||||||| || |||||||||||||| |||||||||| ||| | ||| Sbjct 74821 AGAGTGGAGATTATTGCCAACGACCAAGGTAACAGAACCACTCCATCTTTCGTTGCCTTC 74762 Query 550109 ACGGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCT 550165 || || ||||| | ||| | ||||||| || || || | || || || || || || Sbjct 74761 ACAGACACTGAGAGATTGA-TTGGTGAGGCTGCCAAGAACCAGGCTGCAATG--AACCCA 74705 Query 550166 ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTT 550225 || ||| ||||||| || || | | ||||| |||| ||| | || || || Sbjct 74704 CAGAACACTGTTTTTGACGCCAAGAGACTGATTGGTAGAAAGTTTGACGACACGGAGGTG 74645 Query 550226 CAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATT 550285 ||| | ||||||||||| | |||||| | || | || | || || || | || Sbjct 74644 CAGACCGATATGAAGCACTTCCCTTTCAAGGTTATCAACGAAGGAGGTAAGCCAAAGATA 74585 Query 550286 GAAG-CTACTCATGAAGGATCTGTTAAACAA---TTTTCA--CCAGAACAAATTTCATCT 550339 | | | | | |||| || |||| | | |||| |||||| |||| || || Sbjct 74584 CAGGTCGAAT--ACAAGG----GTGAAACCAAGGTGTTCACTCCAGAAGAAATCTCTTCC 74531 Query 550340 ATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGAT 550399 ||||| || | || |||| | |||| ||| || ||| | ||| | || | ||| Sbjct 74530 ATGGTGTTGACCAAGATGAGAGAAACCGCCGAAGCATTTCTGGGTACTAAGGTCAACGAT 74471 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || | ||||| |||||||| || || ||||| || | |||||||| || ||||| Sbjct 74470 GCCGTTGTTACTGTTCCAGCATACTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCA 74411 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||| || | || ||| | | || || || ||||| ||||| || ||| || Sbjct 74410 GGTGCAATTGCAGGGTTGAACGTTTTGAGAATCATTAACGAACCAACTGCCGCCGCAATT 74351 Query 550520 GCATATGG 550527 || || || Sbjct 74350 GCCTACGG 74343 Score = 102 bits (112), Expect = 7e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 390852 GGCATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAA-CATTTTAACTAATT 390910 || |||||| |||||||||||| | || | || ||||| || |||||| || Sbjct 52536 GGAATTTCTGGTGGTACCATCATAGTGAACCATGATATCTTCCAATGCCTTTAAC-AAAC 52594 Query 390911 TTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTC 390970 |||||||||||||||||| || ||||| |||| ||||||| ||| | ||||||||| | Sbjct 52595 GTCTTTGGATATAACCAGTTTCCGCAGTCTTAACCGCAGTATCAATCAAACCTTCTCTAC 52654 Query 390971 CTGCCATAACTTGGAAGAAAAATTC 390995 | |||||| | ||||| || ||||| Sbjct 52655 CAGCCATAGCGTGGAAAAAGAATTC 52679 >seq69 Length=248830 Score = 154 bits (170), Expect = 1e-31 Identities = 202/278 (73%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 |||||| | ||||||||| || | ||||| ||||||||||| | ||| ||||| Sbjct 198500 GATTGGAATGTTTCAAGAAACAGATACTGGGGTACTCCAATTCCTCTTTGGGTTTCTGAA 198559 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGTG 368703 ||| | | ||||| || ||| | ||||| ||| |||||||| ||| |||||||||| Sbjct 198560 GATCTTAAGGAAATCGTCTGTGTTGGTTCCATTCAAGAATTGAGAGATTTATCTGGTGAT 198619 Query 368704 CAAA--ATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGA 368761 |||| || | || ||| ||| | || || ||||| |||||| |||||||| ||| Sbjct 198620 CAAACCATTTCAGACATTCACAGA--GACAAGATTGACAACATTACCATTCCATCTAAGC 198677 Query 368762 AAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTT 368821 |||| || ||| |||| || |||| | || || ||||| |||||||||||||||| Sbjct 198678 AAGGTAAGGGTCAATTGAGAAGAATTGATGATGTCTTCGATTGTTGGTTTGAATCAGGTT 198737 Query 368822 CTATGCCTTATGGTCAAATACATTATCCATTTGATAAC 368859 | |||||||| | | | || ||||| || || ||| Sbjct 198738 CCATGCCTTACGCTTCTAAGCACTATCCTTTCGAAAAC 198775 >seq97 Length=66064 Score = 113 bits (124), Expect = 4e-19 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||| || | || |||||| |||||| | ||| || || || || || Sbjct 5432 TTTGG--ATGTTGTAGTCGGATAAAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGAT 5375 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | ||||||||| ||||| ||||| ||||| || ||||| |||||||| || || || Sbjct 5374 CAATCTTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTTTGCTTGACATTGTC 5315 Query 563406 AATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| || || | || | | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 5314 AATAGTGTCGGAA-GACTCAACCTCAAGGGTAATAGTCTTACCGGTAAGGGTTTTGACGA 5256 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 5255 AAATTTGCAT 5246 >seq138 Length=17849 Score = 107 bits (118), Expect = 2e-17 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||| || | | |||||| |||||| | ||| || ||||||||||| Sbjct 9687 TTTGG--ATGTTGTAGTCGGACAAAGTTCTACCATCTTCTAATTGCTTACCGGCAAAAAT 9630 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 |||||||||||| ||||| || || ||||| |||||||| || ||||| || || || Sbjct 9629 AAGTCTTTGCTGGTCAGGTGGGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTATC 9570 Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 || || |||| || | | ||| | |||| || |||||||| | || || || | Sbjct 9569 GATAGTGTCAG-AAGATTCGACTTCCAAGGTAATGGTCTTACCAGTTAAGGTCTTGACAA 9511 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 9510 AAATTTGCAT 9501 >seq73 Length=82005 Score = 100 bits (110), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| |||||||| || || || ||||| ||||| | | || || ||| Sbjct 62812 ATCGGTATCGATTTAGGTACAACCTACTCATGTGTCGGTGTCATGAAGAACGGGCGTGTT 62753 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA- 550113 ||||| | |||||||| ||||||||||||| ||| ||||| || ||| | |||||||| Sbjct 62752 GAAATCTTGGCCAATGACCAAGGTAACAGAATTACCCCATCGTACGTTGCCTTCACGGAG 62693 Query 550114 ---AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| || | || ||||||||||||||||| | || || | |||||| ||| Sbjct 62692 AACAACGAAAGACTT-GTTGGTGATGCAGCAAAGAACCAGGCTGCCTCCAATCCTCACAA 62634 Query 550171 TACTATTTTTGAT 550183 ||| | |||||| Sbjct 62633 CACTGTCTTTGAT 62621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029268394285780