Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq183 129 7e-24 seq95 109 7e-18 seq120 102 1e-15 seq60 89.7 6e-12 >seq183 Length=27355 Score = 129 bits (142), Expect = 7e-24 Identities = 207/294 (70%), Gaps = 9/294 (3%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| |||| ||||| ||||| || | | |||||||||||| || Sbjct 26496 TGCAAGCCCTCGTCCCGACAGATCAACTCGTTCGAGAACGTCAAGCCGGGCATGAGCCCC 26437 Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||| | ||| ||||| | |||| || ||||||||| || || ||||| ||||| Sbjct 26436 CGCTTCTTCAACCAGAAGATCGACGCA-AACGAGCCCGAGAAGAAAATCCCCTCCACGGC 26378 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGC--CCTCCTTGTTGATCCACTTC 869350 |||||| | | | |||||| |||| | | || ||| | ||||||||| | Sbjct 26377 GGCAAACGCCACCAAGCGCTCGCCAAA-----CAACGCATCCTTGTCGTTGATCCATCTG 26323 Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGG 869410 | |||||| |||||||| | | | | |||| | | ||||| ||| ||||||| Sbjct 26322 AGCGCCCACTCGGCCTTCTCCTTGATGCACGGGATGTTATCGATCGCGTTGAAGAGGTAC 26263 Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 || || || ||| ||||| || || |||||||||| | ||| || |||||| Sbjct 26262 TCGTTCTCCTTCGGATCCTTCACGTACGTGTCGATCAACAACGAGTACGTCTCC 26209 Score = 116 bits (128), Expect = 5e-20 Identities = 210/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 868709 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 868768 || ||| |||||| |||||||| ||||| | ||||| || |||||| | ||| Sbjct 26787 ACCCGCTTCTCGAAGAAGTTGGTTTTGCCGGCAAGCGAAATGTTCTCCATGAAATCGAAT 26728 Query 868769 GGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACA 868828 ||||||| ||||||||||| ||||| ||||| | | | || ||||||||||||| Sbjct 26727 GGGTTGGTGACGTTGTAGTGCTTGTCGCAGCCGAGGGCGACAAACAAGCGGTCGGCGACA 26668 Query 868829 AACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGAC 868888 ||||||| |||||||||||| | | | ||||||||| | | || |||| | Sbjct 26667 AACTCGACGTACTGGCACATCAAGTCCTTGTTCATGCCCAACAAGTTGACGGGCAAGGCG 26608 Query 868889 TCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCA--CG- 868945 || | | | |||||||| || ||||||||| |||||||| | || || || Sbjct 26607 TCAGTGAAGTAGCGCTTCTCGATATCAACGGCCTCGGTGATGATCTTGC-GGACAATCGT 26549 Query 868946 -TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCAA 869004 ||| ||| || || || | | | || | | | || ||||||||||||| |||||| Sbjct 26548 CTCGTCCGGGGTGTTATTCAGGTG---CGAGAACAACAAGCAGGCAAAGTCGGTGTGCAA 26492 Query 869005 CCC 869007 || Sbjct 26491 GCC 26489 >seq95 Length=34527 Score = 109 bits (120), Expect = 7e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || | ||||||| ||| || || || | ||| || | || |||||||| Sbjct 1195 TGGTCGACATATCTGGCCGTGTTGTTGAAAACACGCATCATTGGAATGATACCGTTGGAA 1136 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAAAGCC 1630184 |||||||| || || | ||||| ||| | ||| | | ||||| | ||||| || Sbjct 1135 GTACCGTTGGTACCTGCAATGTAGGAGCCTGTGGCTCTGATGTTGTGGATGTGCAAA-CC 1077 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || | ||||||||| ||||| |||||||| | ||||||||||| ||||| Sbjct 1076 AATACCACCTGCGGTCTTGGAGATCAGCGCACACTGTTTCAAAGTGTCGTAGATACCCTC 1017 Query 1630245 GATCGAGTC 1630253 ||||| || Sbjct 1016 AATCGAATC 1008 >seq120 Length=74726 Score = 102 bits (112), Expect = 1e-15 Identities = 257/385 (67%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 1573866 GACGGCGACATGCCCAACCTCTTGCTG-GCGGGTCCGCCCGGCACGGGCAAGACCACGAG 1573924 ||||| || ||||| |||| | || ||||||| |||||| | || ||||| ||| | Sbjct 38187 GACGGAAACCTGCCCCACCTGATCTTGAGCGGGTC-GCCCGGAATCGGGAAGACGACG-G 38244 Query 1573925 CATCGCG-TGTCTGGCGCGTGTCCT-CTTGGGCGCGGCCGCCGAC--------GAGGCCG 1573974 | || ||||| ||| | | || |||||| || || ||| ||||||| Sbjct 38245 CGGTGCTCTGTCTTGCGAGAGAGCTTCTTGGGGACGACCCGAGACTGCTGAAGGAGGCCG 38304 Query 1573975 TGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGC 1574034 |||| || | |||||||||||||| || ||| ||||| | || || || || |||||| Sbjct 38305 TGCTTGAGTTGAACGCGTCGGACGACCGAGGCATCGACATTGTACGGAACATGATCAAGA 38364 Query 1574035 ACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACG 1574094 || |||| | || ||||| | || |||||| | |||| || |||| Sbjct 38365 CTTTTGCACAGAAGAAGGTCACGCTGCCATACAACCGGCACAAGATTGTCATTCTGGACG 38424 Query 1574095 AGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACA 1574154 |||| |||| | ||| || || |||||||| ||| | || ||||| | || Sbjct 38425 AGGCGGACTCGATTACGGCGAGTGCGCAGCAGGCGCTGAGACGGACGATGGAGATCTACT 38484 Query 1574155 CCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCC 1574214 | |||| ||||| |||| | | |||||||| |||| | | |||||||| | | | Sbjct 38485 CGAACAGTACGCGGTTTGTCTTCTCGTGCAACCAGTCGAACAAGATCATCGAGCCGTTGC 38544 Query 1574215 AAAGTCGCTGCGCCATTCTGCGCTT 1574239 | ||||| ||| |||| |||| || Sbjct 38545 AGAGTCGGTGCTCCATCTTGCGGTT 38569 >seq60 Length=60384 Score = 89.7 bits (98), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || || ||| ||||| | ||||| ||||||||||| | | | || Sbjct 52922 GCTTGGACAACTCTCCTGGCAAGATCAATCTGACGGCAGTCTGGATCTCTCTGGCGGAGA 52863 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || |||| | |||||||| |||| | || | | Sbjct 52862 TGGTCGACTTCTTGTTGTAGGCAGCCAACTTGGAGGCCTCGGAAGCGATTCTCTCAAAGA 52803 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||| | |||||| | ||| | |||||| ||| ||| |||| Sbjct 52802 TGTCGTTCACGAAAGAGTTCATTATCGACATGGCCTTCTGGGAGATACCCGTGTCCGGGT 52743 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||| | ||||||||||||| | || ||||| Sbjct 52742 GGGTCTGCTTCAACACCTTGTAGATGTAGGAGGAGTA 52706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107096362235474