Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq95 163 3e-35 seq183 116 4e-21 >seq95 Length=34527 Score = 163 bits (180), Expect = 3e-35 Identities = 404/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||| | ||||| | ||||| ||||| |||||| | | | | ||||| ||| Sbjct 844 TCATGAGAGTCGCTGTCGGTATTCACGGCGACGACATTGAGAGCGCCATCGAGACCTACA 903 Query 53253 ACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 |||| ||| | || || ||||| || ||||| | || ||| |||||||||| ||||| Sbjct 904 ACTTGATGT-CTAAGAGATACTTCACTCACGCTTCTCCTACCTTGTTCAACGCAGGTACC 962 Query 53312 --AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || | || ||||||| ||| ||| |||| || ||| | ||||| ||||| || | Sbjct 963 CCAAGAAACC--AGATGTCCTCCTGTTTCTTGGTCGCAATGCAAGATGATTCGATTGAGG 1020 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || | || ||||||| | ||||||||| | |||||||| ||| Sbjct 1021 GTATCTACGACACTTTGAAACAGTGTGCGCTGATCTCCAAGACCGCAGGTGGTATTGGTT 1080 Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | ||| | ||| || | || | ||| | || || || ||||| || Sbjct 1081 TGCACATCCACAACATCAGAGCCACAGGCTCCTACATTGCAGGTACCAACGGTACTTCCA 1140 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||| | || || ||||||||||||||| | || ||| |||| |||| Sbjct 1141 ACGGTATCATTCCAATGATGCGTGTTTTCAACAACACGGCCAGATATGTCGACCAAGGTG 1200 Query 53550 GTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || || | | ||| | | || || |||| || ||||| |||||| |||| || | Sbjct 1201 GTAACAAAAGACCAGGTGCCTTT-GCGCTCTATCTTGAGCCATGGCACTCCGATATCTTC 1259 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 || || |||| || | ||| || ||| | ||||| || | | | ||| |||| Sbjct 1260 GACTTCATCGACGTGAGAAAGAACCACGGTAAGGAAGAAATCAGAGCCAGAGACTTGTTC 1319 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 | || ||||||| || ||| | |||||| | | || ||| || | |||| ||| Sbjct 1320 CCTGCATTGTGGATACCTGACTTGTTCATGAAGAGAGTTGAGCAGAATCAGGAATGGACT 1379 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 || | | ||| | ||| ||| ||| | | ||||||||||| ||||| | ||| Sbjct 1380 CTTTTCTCCCCAAGTGAGGTCCCAGGCTTGTCCGACGTCTACGGTGACGAGTTCGAAGAG 1439 Query 53789 ATGTAT 53794 | ||| Sbjct 1440 CTATAT 1445 Score = 154 bits (170), Expect = 2e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||||| | || ||| || |||||||| ||||||||| | || |||||| | Sbjct 2368 TCAAGGACTTGTATAAGACCGTCTGGGAGATCCCACAGAAGGCGATCATCGACATGGCGG 2427 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| | |||||||||||||||||||| ||||| |||||||| | || |||| || Sbjct 2428 CTGACAGAGGTGCGTACATCGACCAGTCTCAGTCCATGAACATCCACTTGAAGAACCCAA 2487 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | ||| |||||||| |||||||||||| ||||| ||||||||||| | ||||| |||| Sbjct 2488 CCATGGGCAAGTTGACCTCGATGCACTTCTACGGTTGGAAGAAGGGGTTGAAGACAGGTA 2547 Query 55908 TGTACTATCTGCGGACCC 55925 ||||||| || | |||| Sbjct 2548 TGTACTACCTCAGAACCC 2565 >seq183 Length=27355 Score = 116 bits (128), Expect = 4e-21 Identities = 380/580 (66%), Gaps = 14/580 (2%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| |||| || || | | ||||| || ||||| |||| | ||| Sbjct 26509 GGCAAAGTCGGTGTGCAAGCCCTCGTCCCGACAGATCAACTCGTTCGAGAACGTCAAGCC 26450 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGA 74868 ||||| || || |||||||||||||| ||||| | | || || || || |||||| | Sbjct 26449 GGGCATGAGCCCCCGCTTCTTCAACCAGAAGATCGACGCA-AACGAGCCCGAGAAGAAAA 26391 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-A 74925 | || || || ||||| || || | ||| | | ||| ||||| | || | Sbjct 26390 TCCCCTCCACGGCGGCAAACGCCACCAAGCGCTCGCCAAACAACGCATCCTTGTCGTTGA 26331 Query 74926 TCCAAGTCTGAGC--CCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTT 74982 |||| ||||||| ||| || || || |||| ||| |||| |||||||||| | Sbjct 26330 TCCA--TCTGAGCGCCCACTCGGCCTTCTCCTTGAT-GCACGGGATGTTATCGATCGCGT 26274 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 ||||||| | ||||| | |||||||| ||| | |||| |||| | ||||||| Sbjct 26273 TGAAGAGGTACTCGTTCTCCTTCGGATCCTTCACGTACGTGTCGATCAACAACGAGTACG 26214 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||||||| || || ||| | | |||| | |||||||| || ||||| | | Sbjct 26213 TCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAACACTTTGCCTCCGGCA 26154 Query 75103 TCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGG 75162 ||| || || || || ||| | | ||||| | || || |||||||| |||| Sbjct 26153 CCTGCACCTCTGCGGAGAAGTTCTCCACCAAGTTCTCGTTCACAATCCCGTCCGAAGCGG 26094 Query 75163 CGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCC 75219 | || || |||| || | ||| |||| | ||| | ||| | | | || || Sbjct 26093 CAAAGAACGCCAACACTCTCGAGATGAAGTATCTCTCGTTGTCGTTCAACCTCTCGTTCC 26034 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | || | ||||||| | | ||| ||||||||| | ||||| ||| | |||| Sbjct 26033 AGTCGTGCAGGTCCTTTGAGAGATCGATCTCCTCGGCGGTCCAAAAAGAGGCCTCTGCCT 25974 Query 75280 TTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 | ||||||| ||| | || |||| ||||| || || Sbjct 25973 TCTTGTACATCTGCCATATCTCGTGGTACTTGATCGGGAA 25934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212429415600