Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq97 113 3e-20 seq138 89.7 4e-13 seq468 86.0 4e-12 >seq97 Length=66064 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||| ||||||||||| || ||||| ||||| || || |||||| |||| || || Sbjct 5242 TAAGATGCAAATTTTCGTCAAAACCCTTACCGGTAAGACTATTACCCTTGAGGTTGAGTC 5301 Query 27846 CACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||||| | | ||||| ||||| |||||||| ||||| |||||| |||| Sbjct 5302 TTCCGACACTATTGACAAT--GTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCACCT 5359 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||| | || || || || || || |||||||| || | | | || ||||| Sbjct 5360 GACCAGCAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTTTATCCGAC 5419 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||||||||| || ||||||||| ||||| || Sbjct 5420 TACAACATCCAAAAGGAATCCACTTTGCACTTGGTCTT 5457 >seq138 Length=17849 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| || || | ||||| || ||||| | || |||||| Sbjct 9498 AAGATGCAAATTTTTGTCAAGACCTTAACTGGTAAGACCATTACCTTGGAAGTCGAATCT 9557 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | | ||| ||||| ||||| || || || |||||| | || | Sbjct 9558 TCTGACACTATCGATAAT--GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCACCTG 9615 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | | ||||||||||| || ||||| || || | | | |||||||| | Sbjct 9616 ACCAGCAAAGACTTATTTTTGCCGGTAAGCAATTAGAAGATGGTAGAACTTTGTCCGACT 9675 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||| || || || ||||| ||| | ||| | || || Sbjct 9676 ACAACATCCAAAAAGAATCAACCTTACACTTGGTCTTGAGATTGAGAGGTGG 9727 >seq468 Length=160 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 ||||| ||||| || ||||| |||||| |||| || ||||| | | ||||| Sbjct 7 GTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAGCAGAGACTTATTTTC 66 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || |||||| | || |||| | | | |||||| || |||||||||||||| || Sbjct 67 GCTGGTAAACAACTAGAAGACGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCG 126 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| | ||| | || || Sbjct 127 ACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860136047894