Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pichia_20membranifaciens_20[genbank_20GCA_5F001950575.1_202016-12- 15] 522 sequences; 11,394,881 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq138 174 4e-38 seq97 167 6e-36 seq468 132 1e-25 seq98 100 7e-16 seq144 93.3 1e-13 >seq138 Length=17849 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | || ||||||||||||| ||||| |||| ||||||||| || Sbjct 9716 TCTCAAGACCAAGTGTAAGGTTGATTCTTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 9657 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| || || || ||||||| ||| ||||| || || ||||||||||| Sbjct 9656 ATCTTCTAATTGCTTACCGGCAAAAATAAGTCTTTGCTGGTCAGGTGGGATACCTTCCTT 9597 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||||||| ||| ||||| ||||| || | ||| || || || || || Sbjct 9596 ATCTTGGATCTTTTGCTTGACATTATCGATAGTGTCAGAAGATTCGACTTCCAAGGTAAT 9537 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || || | || | |||||| || Sbjct 9536 GGTCTTACCAGTTAAGGTCTTGACAAAAATTTGCATCTT 9498 >seq97 Length=66064 Score = 167 bits (184), Expect = 6e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | ||||||||| ||||||| ||||| |||| |||||||| || Sbjct 5461 TCTTAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGATAAAGTTCTACC 5402 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||||||||| | || ||| ||||| || |||||||||||||| Sbjct 5401 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAATACCTTCCTT 5342 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| |||||||| ||| || || ||||| || | || || || | || || Sbjct 5341 GTCTTGGATTTTTTGCTTGACATTGTCAATAGTGTCGGAAGACTCAACCTCAAGGGTAAT 5282 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| || || | ||||| | ||| | |||||| ||| Sbjct 5281 AGTCTTACCGGTAAGGGTTTTGACGAAAATTTGCATCTTA 5242 >seq468 Length=160 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 147 TCTCAACACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCC 88 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || |||||||| ||||||| || ||||| || |||||||||||||| Sbjct 87 GTCTTCTAGTTGTTTACCAGCGAAAATAAGTCTCTGCTGGTCTGGTGGAATACCTTCCTT 28 Query 225618 GTCTTGGATCTTTTGCTTCAC 225638 ||| |||||||||||||| || Sbjct 27 GTCCTGGATCTTTTGCTTGAC 7 >seq98 Length=37413 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || |||||||||||||||||||| Sbjct 19168 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCAGAAACATCACC 19227 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | || ||||| || || | || |||||||| Sbjct 19228 ACCTTGGGTTTCAATGACTGGTAAAGCAGTCAAAGAACCACCACC 19272 >seq144 Length=18003 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 225601 GGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTT 225660 || ||||||||||||||||| |||||||||||||| || ||||| |||||||||| Sbjct 2 GGTGGAATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTATCGATCGTGTCTGAGGAC 61 Query 225661 TCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 || || || | || || ||||| || ||||| || || | ||| | |||||| || || Sbjct 62 TCAACCTCAAGGGTAATAGTCTTACCGGTCAATGTCTTAACGAAAATTTGCATCTTCTG 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523224202268