Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 192 6e-44 >seq3 Length=1410883 Score = 192 bits (212), Expect = 6e-44 Identities = 484/729 (66%), Gaps = 10/729 (1%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || ||||| || | ||||| || ||||| ||||| || | || || || |||| Sbjct 929446 TTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTTT 929387 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| |||||||| ||||| ||| | || | | | || | ||||| | ||| Sbjct 929386 CCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGT-TACCCAAAGCAACTAA- 929329 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG 16089 |||||||||||| |||||||| | |||||||||||| ||| || ||| || || | | Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269 Query 16090 TCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGAT 16149 || || | || | || ||||||| | ||| || ||| ||||| | || || Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209 Query 16150 ATCGGTGGCTCGTGTTTCAGACGGTG-TATGGTTT--AGGTGTTTAAACATTAGACACGC 16206 | | |||| | || | || ||| | || |||| || || || Sbjct 929208 CC---TCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGC 929152 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||||| ||||| ||||| ||||||| || | |||||| || || || | ||||| Sbjct 929151 AAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGG 929092 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| | |||| ||||| |||||||| || | |||||||| || ||||| ||||| Sbjct 929091 CATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACC 929032 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 |||||||| || ||||| | | ||||| || | ||||||| || ||||| Sbjct 929031 CTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATCCA 928972 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 | || |||| || || || | || ||||| || | || || || |||||||| Sbjct 928971 TCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAA 928912 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 || || | ||| | ||||| |||||||||| |||| ||| ||||||| Sbjct 928911 AAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGA 928852 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||| || ||||| || || ||||||||||| |||||| || || | | ||| || Sbjct 928851 GTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAAC 928792 Query 16567 TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 ||| | | || || ||| |||||| || || ||||| ||| ||||||||| || Sbjct 928791 TTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAA 928732 Query 16627 CGCCAATAT 16635 || || || Sbjct 928731 AGCTAAGAT 928723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414342465880