Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 286 4e-72 >seq3 Length=1410883 Score = 286 bits (316), Expect = 4e-72 Identities = 775/1173 (66%), Gaps = 50/1173 (4%) Strand=Plus/Minus Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 53578 || || || || |||| ||||| ||||| | | | || ||||| |||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 53579 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TG 53635 | | |||||||||| |||||||||||| || || ||| | || | ||| | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 53636 ACAA--TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-----TTGTC----CAT 53684 || |||||| | ||| | ||||| ||||| | | ||| ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 53685 CTATT---ACAAA--CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 | | ||||| || | ||| | |||||||||| ||||| || || ||||||| Sbjct 802452 CACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACATACAGCAACCTCATC 802395 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | | |||| | ||||| || | ||| | || || | || ||||| Sbjct 802394 TGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATT 802335 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 | ||| ||| |||| |||||||| ||||| |||||||| |||||||| ||||| || || Sbjct 802334 CTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTC 802275 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 | || | |||| || || | ||| | ||||||| | | | ||| | Sbjct 802274 TGTTTGAGCCTCTAAGATAGCATACCATAACTTCTGAGCCTTGAC----GGTCTGTCTTC 802219 Query 53920 C----TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 | ||||||||||||||| | ||||| ||| ||||| || || | |||| Sbjct 802218 CACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAAT---TTGT 802162 Query 53976 C---CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 54032 | ||| || ||| ||||| || | | ||| | ||| ||| | | || |||| Sbjct 802161 CAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTACTC 802102 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092 |||||| || | |||||| ||||| | |||| ||||| ||||||| ||| | ||| | Sbjct 802101 TTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCTT 802042 Query 54093 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | || || |||||| ||| || | ||| | | |||||| | |||||| ||||| | Sbjct 802041 CCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGA 801982 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 54212 ||| | | | | ||||| | ||||||||| || ||||| | ||| | ||| |||| Sbjct 801981 TGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTGT 801922 Query 54213 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 54272 | ||| | || | | ||| ||||||||||| ||||| | ||| ||||| |||| || | Sbjct 801921 TGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGT 801862 Query 54273 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGA 54332 || || | | |||||||||| || | ||| || || || || | || || | Sbjct 801861 AGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAA 801802 Query 54333 TTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391 | || || || ||| || ||||| |||||||| || || || || ||| ||||| | Sbjct 801801 TCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCA 801743 Query 54392 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 54451 | | || || ||||||||| | | || || ||||| || ||||| || ||| Sbjct 801742 ACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAA 801683 Query 54452 GCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGC---TGAGTCTAT 54507 || || || || || ||| ||| | ||| |||||| ||||| ||| | || | || Sbjct 801682 GCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGG---AT 801627 Query 54508 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 ||| | |||||| || | || || | ||| | || ||| |||||||| || | | Sbjct 801626 ATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCAAC 801567 Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| || | |||| ||||| ||| | || || || || ||||| || |||||||| Sbjct 801566 CTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTGTA 801507 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 ||||| || ||| ||| |||| | ||||| Sbjct 801506 GTTGAAGTCGCGATCGAAAACAATAGCAGAGTT 801474 Score = 197 bits (218), Expect = 2e-45 Identities = 591/901 (66%), Gaps = 26/901 (3%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| ||||| ||||| || |||| || | ||||| ||||| || |||||||| | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT-C 23949 || || || |||||||||||||| | ||||| |||||||| || | ||||| | | Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACAC-CTTTTCGTTAC 929342 Query 23950 CCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 |||| || | ||||||||||| ||||| || | |||| ||||| | || Sbjct 929341 CCAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTAT 929282 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || | | || || | || | || | |||||| | |||||| | || | Sbjct 929281 TCATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGG 929222 Query 24070 CGTCTGTTATAATAGATCTTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 | || || ||||| ||| | | ||||| || ||| | ||||| ||| Sbjct 929221 CTTCGGTGATAATCC-TCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAAC 929163 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 | || || || || || |||| ||| || ||||| | ||| |||||||| || || Sbjct 929162 AATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAAT 929103 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 || || || ||||| | || | ||| || | ||| || || || |||||||| ||| Sbjct 929102 GTAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTG 929043 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAACCGGCGCTGT 24306 |||||||| || || || || || || |||| ||| | ||| || |||| || | Sbjct 929042 AAGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAAT--GCATCTT 928985 Query 24307 CAT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| || ||||| | |||||| || |||||||| || | ||| || || | || | Sbjct 928984 CATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAA 928925 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | |||||||| | | ||| || || ||| || | ||| ||||||||||| | | Sbjct 928924 TTGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAG 928865 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 || |||| || || || || || || ||||||||||| || || ||| | || | Sbjct 928864 AGTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTT 928805 Query 24484 CGGTAATCTGTACTTC--TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 | | || || ||||| | ||| || || | || || || || || || || || Sbjct 928804 CTGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATC 928747 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 | || ||||| || || || | | || ||| | |||| | ||| | || Sbjct 928746 AGATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCAT----TGTCATTTA 928691 Query 24602 A-------TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 24654 | ||||| |||| | || ||| | || | ||| || | |||||||||| Sbjct 928690 ACTTGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATG 928631 Query 24655 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAA 24714 | ||||| || ||||| ||||| | |||||| || |||||| |||||||| | ||||| Sbjct 928630 AAGCCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAA 928571 Query 24715 A 24715 | Sbjct 928570 A 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721533206320