Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq8 143 4e-29
seq3 129 9e-25
>seq8
Length=1028784
Score = 143 bits (158), Expect = 4e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || || |||||||| ||| | || |||| | |
Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || || || |||||||| |||||||| ||||| || ||
Sbjct 326462 GACACTATTGACAATGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAG 326521
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||| | ||||| || || |||||||| || || || ||||||| || || |||
Sbjct 326522 CAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACAAT 326581
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767
|||||||| ||||| ||||| ||||||||||| | ||| |||||||||
Sbjct 326582 ATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGGTTAAGAGGTGGTA 326630
Score = 136 bits (150), Expect = 6e-27
Identities = 173/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || || ||||| || ||| | || |||| | |
Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| || | || || || |||||||| |||||||| ||||| || |||
Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | ||||| || || ||||||||||| || | |||||||| ||| || ||
Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAACATTATCAGACTACAAC 326125
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| ||||| ||||| ||||||||||| | || |||||||||| ||| ||
Sbjct 326126 ATTCAAAAGGAATCTACTTTACATTTGGTTTTGAGATTGAGAGGTGGTATGCAAATTT 326183
Score = 134 bits (148), Expect = 2e-26
Identities = 144/187 (77%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|||||||||||||| |||||||| ||||| || |||||||| | ||||| || || |||
Sbjct 325802 AAAATTCAAGATAAGGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCCGGTAAA 325861
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|||||||| || | |||||||| || || || |||||||| ||||| ||||| |||
Sbjct 325862 CAATTAGAAGACGGCAGAACATTATCTGACTACAACATTCAAAAGGAATCCACTTTACAT 325921
Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA--TTGATTGTAAATAAA 124799
|||||||| | || |||||||||| ||| ||| | || | |||| || ||| ||
Sbjct 325922 TTGGTTTTGAGATTGAGAGGTGGTATGCAAATCTTCGTCAAGACTTTGACTGGAAA-AAC 325980
Query 124800 TATCACT 124806
||||||
Sbjct 325981 AATCACT 325987
Score = 118 bits (130), Expect = 2e-21
Identities = 191/271 (70%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| | || || ||||| || ||| | || |||| | |
Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || || | || || || |||||||| |||||||| ||||| || |||
Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | || ||||| || |||||||| || || | |||| || || || ||
Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
|||||||| ||||| ||||| ||||||||||| | || |||||||||| ||| |||
Sbjct 326354 ATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGGTATGCAAATCTTC 326413
Query 124778 ATAAAAA--TTGATTGTAAATAAATATCACT 124806
| || | |||| || ||| || ||| |||
Sbjct 326414 GTCAAGACTTTGACTGGAAA-AACTATTACT 326443
Score = 105 bits (116), Expect = 1e-17
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| || | ||||| ||||||| || ||||| || | ||| | ||| |
Sbjct 325487 ACAATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCC 325546
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||| || || || | || || || |||||||| |||||||| || || ||
Sbjct 325547 TCTGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGAC 325606
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| ||||| | ||||| || || |||||||| || || | |||| || || ||
Sbjct 325607 CAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 325666
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| ||||| ||||| ||||| || || | || ||||||||||
Sbjct 325667 AACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 325719
>seq3
Length=1410883
Score = 129 bits (142), Expect = 9e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| ||||||| || ||||| || ||||| | ||| | |
Sbjct 317782 ATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCT 317723
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||||||||| || |||||||| |||||||||||
Sbjct 317722 GACACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGATCAG 317663
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | || || || || ||||| || || ||| | |||| || || |||||
Sbjct 317662 CAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACTATAAC 317603
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| || || || ||||||||||| || | || |||||||| ||| ||
Sbjct 317602 ATCCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 317547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455915011200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |