Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8 129 9e-25 seq3 113 7e-20 >seq8 Length=1028784 Score = 129 bits (142), Expect = 9e-25 Identities = 113/138 (82%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || |||||||||||||||||||| ||| || || || || ||||| Sbjct 326172 CCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTCTGA 326114 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| || ||||||||||| ||||| |||||||||||||| || || || || Sbjct 326113 TAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 326054 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 326053 GATACCTTCCTTATCTTG 326036 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || ||||||||||||||||| || || || || || || Sbjct 325716 CCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 325657 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | || || |||||||| ||||| ||||||||||||||||| || |||||| Sbjct 325656 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGA 325597 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 325596 ATACCTTCCTTATCTTG 325580 Score = 116 bits (128), Expect = 6e-21 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 |||||||| | || || |||||||||||||| |||| |||| || ||||| || || || Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATATTGTAGTCCGA 326570 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || || |||||||| ||||| |||||||| |||||||| || || || Sbjct 326569 CAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGG 326510 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 326509 AATACCTTCCTTATCTTG 326492 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || |||||||||||||| ||||| ||| || || || || || || Sbjct 325944 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTCAGA 325886 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| || ||||||||||| || || ||||| |||||||| || || || || Sbjct 325885 TAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGG 325826 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 325825 GATACCTTCCTTATCTTG 325808 Score = 105 bits (116), Expect = 1e-17 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 |||||||| | ||| || |||||||||||||| |||| |||| || || || || || || Sbjct 326400 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTCGGA 326342 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || || |||||||| || ||||| || |||||||| || || || || Sbjct 326341 CAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGG 326282 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || ||||| |||||||| |||||| ||| || || Sbjct 326281 GATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAAC 326222 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| | ||||||||||| || || || || || | ||| |||||||| Sbjct 326221 TTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 >seq3 Length=1410883 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || |||||||| || ||||| || || || ||||| || || Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| || || ||||| ||||| || || |||||||||||||| || ||| Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || || ||| || Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| || || || ||||||||||| || |||| ||| |||||||| || Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526316353280