Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 288 9e-73 >seq3 Length=1410883 Score = 288 bits (318), Expect = 9e-73 Identities = 599/882 (68%), Gaps = 15/882 (2%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| ||||| |||||||||||||| || || ||||| || | || || || ||| Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAAC 16060 ||||| ||||||||||||||| | |||| | ||| || ||| ||||| | | Sbjct 929387 TCCATGAAATCAAAAGGATTTGT--AACATT-GTACACCTTTTCGTTACCCAAAGCAACT 929331 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 ||||||||||| || |||||||| | ||| || ||| || | ||||| || | Sbjct 929330 AATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAAC 929271 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || ||||| | ||| || || ||||| | ||||| || |||| ||||| |||| Sbjct 929270 AAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATA 929211 Query 16181 ATATCTCTTACTACACTATTT--AAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAA 16237 || |||| | ||| | | | | | || |||| || || |||| || ||| Sbjct 929210 ATC-CTCTCA--ACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAA 929154 Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||||| ||| ||| || ||||| || || | || || ||||| || |||||||||||| Sbjct 929153 GCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCT 929094 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||| | |||| || || | ||| || |||| |||||||||||| ||||| ||| Sbjct 929093 GGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATA 929034 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 || ||||| || || || ||||| | || |||||| | | || || | | ||| Sbjct 929033 CCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATC 928974 Query 16418 cattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 ||| | |||||| | || || | || | ||| ||||| || ||||||||||| Sbjct 928973 CATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAAC 928914 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 ||| | | ||||| ||| ||||| ||||| || | |||| || ||||| Sbjct 928913 AAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCT 928854 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 || || ||||||||||| || ||||| |||||||||||| | ||||| | | ||| Sbjct 928853 GAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGA 928794 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 ||||||| | || | || | ||||| ||||| || || ||||| || ||||| Sbjct 928793 ACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAG 928734 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTTTT--AACCAGTCA 16714 || || | || | ||| ||| |||| || || | || || | ||||||| Sbjct 928733 AAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGTCA 928674 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTA 16774 || || || || || | || || |||||||||| ||||| |||| ||||| Sbjct 928673 TGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTTTG 928614 Query 16775 TACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 ||||||| ||| || || | || || ||||||| |||| Sbjct 928613 TACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACA 928572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511947967400