Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 >seq8 Length=1028784 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTT 45168 |||||||||||||| || ||||| || | ||| ||||| |||||||||||||| | | Sbjct 325944 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAT 325885 Query 45169 CA-GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| || | |||||| |||||||| || || | |||||||| || | Sbjct 325884 AATGTT--CTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTG 325827 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||| || |||||| ||| || | | |||| | ||| | Sbjct 325826 GGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGA 325767 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | |||||| ||||| || |||| |||||| || ||||||||||| Sbjct 325766 CCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || ||||| || | ||| ||||| ||||||||||||||| | Sbjct 326400 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 326341 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | |||| |||| |||||| ||||| || || || | |||||||| || | Sbjct 326340 AAGGTT--CTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTG 326283 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||| || || || ||| || | | | || | ||| | Sbjct 326282 GGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAA 326223 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| || || || || || |||| |||||| || || |||||||| Sbjct 326222 CTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075156665189