Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq8 113 3e-20 seq3 91.5 1e-13 >seq8 Length=1028784 Score = 113 bits (124), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||||||||||||||||| || ||| | | ||||||||| Sbjct 326377 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCCAAT 326320 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 ||||| || ||| |||| | ||||||||| || || | ||||||||||| || Sbjct 326319 TGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATC 326260 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | |||||| | | | ||| ||| | ||| ||| | ||||| |||| ||| Sbjct 326259 TTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGATTGTTTTTCCG 326200 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || || ||||||||||| Sbjct 326199 GTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||||||||||||||| | | |||| | | ||||| |||||||| || Sbjct 326142 GTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCGTCTTCTAATTGTTTACCA 326083 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || | || | ||||||||| || || | ||||||||||| || | |||| Sbjct 326082 GCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTG 326023 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| || ||| ||| | ||||| |||| || ||||| || Sbjct 326022 ACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTC 325963 Query 18309 TTTACAAAAATTTGCAT 18325 || || || |||||||| Sbjct 325962 TTGACGAAGATTTGCAT 325946 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| |||||||| |||||||| | || |||| ||| ||||||||| Sbjct 326605 ATGTAAAGTG--GATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAAT 326548 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 ||||| || || | || | ||||| || || || | ||||||||||| || Sbjct 326547 TGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATC 326488 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | |||||| | ||| ||||||| || ||| ||| | || || |||| || Sbjct 326487 TTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCA 326428 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || || || |||||||| Sbjct 326427 GTCAAAGTCTTGACGAAGATTTGCAT 326402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| ||||||||||||||||| | | |||| | | ||||| ||| Sbjct 325921 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTCTTCTAAT 325864 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 ||||| || || | || | ||||||||| || || | ||||||||||| |||| Sbjct 325863 TGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATT 325804 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | |||||| | | | ||||| | |||| || | ||| ||| | || || Sbjct 325803 TTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGTCTTACCA 325744 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || || || |||||||| Sbjct 325743 GTCAAAGTCTTGACGAAGATTTGCAT 325718 >seq3 Length=1410883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || || ||||| ||||| ||||| | || ||| | | ||||||||| ||||| || Sbjct 317586 GTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATCTTCCAACTGTTTACCA 317645 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 || |||| | |||||| ||||| || | |||||||| || ||||| | |||| Sbjct 317646 GCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGACTTG 317705 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| || ||| || | ||| || | || || || || || Sbjct 317706 ACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAATAGTCTTACCTGTTAAAGTC 317765 Query 18309 TTTACAAAAATTTGCATTTT 18328 || || ||||||||||| || Sbjct 317766 TTAACGAAAATTTGCATGTT 317785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343958390705