Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 311 1e-79 >seq3 Length=1410883 Score = 311 bits (344), Expect = 1e-79 Identities = 895/1359 (66%), Gaps = 56/1359 (4%) Strand=Plus/Minus Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816 || || || || |||| ||||| ||||| | | | || ||||| |||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 62817 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TG 62873 | | |||||||||| |||||||||||| || || ||| | || | || | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 62874 ACAA--TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---------CAT 62922 || |||||| | ||| | ||||| ||||| | | | ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 62923 CTATT---ACAAA--CATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATT 62977 | | ||||| || | ||| | | |||||||| ||||| || || ||||||| Sbjct 802452 CACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACATACAGCAACCTCATC 802395 Query 62978 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 63037 | | | | |||| | ||||| || | ||| | || ||| | || ||||| Sbjct 802394 TGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATT 802335 Query 63038 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63097 | ||| ||| |||| |||||||| ||||| |||||||| |||||||||||||| || || Sbjct 802334 CTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTC 802275 Query 63098 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC 63156 | |||| |||| || || | ||| | | || ||||||| | | | ||| | Sbjct 802274 TGTTTGAGCCTCTAAGATAGCATACCATAACTTCT-GAGCCTTGAC----GGTCTGTCT- 802221 Query 63157 TCC-----TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63211 ||| |||||||||||||| ||||| ||||||||| || || | || Sbjct 802220 TCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAAT---TT 802164 Query 63212 GTC---CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 ||| ||| | ||| ||||| || | | ||| | ||| ||| | | || || Sbjct 802163 GTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTAC 802104 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || |||||| || | |||||| ||||| | |||| ||||| ||||| | ||| | ||| Sbjct 802103 TCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTC 802044 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 || || || |||||| ||| || | ||| | | |||||| | |||||| ||||| Sbjct 802043 TTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTC 801984 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 | ||| | || | | ||||| | ||||||||| || ||||| | ||| | ||| || Sbjct 801983 GATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGT 801924 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| ||| | || | | ||| |||||||||||||| || |||| ||||| |||| || Sbjct 801923 GTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAAT 801864 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||| | || | | |||||||||| || | ||| || || || || | || || Sbjct 801863 GTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGA 801804 Query 63569 GATTAATGCGCATCGTTTT-AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 || || || || ||| || |||||||||||||| || || ||| || || ||||| Sbjct 801803 AATCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGG 801745 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || | || || ||||||||| | | | || || ||||| || ||||| || | Sbjct 801744 CAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGG 801685 Query 63688 AAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC---TGAGTCT 63743 |||| || || || || ||| ||| | ||| |||||| ||||||||| | || | Sbjct 801684 AAGCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGG--- 801629 Query 63744 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACA 63803 ||||| | |||||| || | || || | ||| | || ||| |||||||| || || Sbjct 801628 ATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCA 801569 Query 63804 ATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63863 | || || | ||||| ||||| ||| | || || || || ||||| || |||||| Sbjct 801568 ACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTG 801509 Query 63864 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACT 63923 || ||||| || ||| ||| |||| | || || | || ||| || | ||| Sbjct 801508 TAGTTGAAGTCGCGATCGAAAACAATAGCAGAGTTCAACTCATCAGCATTGGCTTGAACA 801449 Query 63924 ATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 63982 ||||| ||| | ||| || || || |||||||| || | || || || | ||| Sbjct 801448 ATATCGTAGGT-CTCCTTGGAGATCATGGGAGAATGCAGGTCAGTCTTTGGGTTGATATA 801390 Query 63983 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 64042 | | | || | || ||||| ||| | || |||||| ||| || | || || Sbjct 801389 CTCGTACAACTGCTTACACACTTGTGAAAACTGCTTGATTGTTTGCTTATGCAAGTTGGA 801330 Query 64043 TATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 | ||| |||||||| || | ||| || || || || || Sbjct 801329 AACGGCAATTCTGGCTGCCAAAATAGCGTAGTCTGGGTG 801291 Score = 206 bits (228), Expect = 3e-48 Identities = 591/900 (66%), Gaps = 24/900 (3%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| ||||| ||||| || |||| || | ||||| ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 ||| || || ||||||||||||||||| ||||| ||||||||||| | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 ||| || | ||||||||||| || ||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || | | || || | || | || | |||||| | |||||||| || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 33518 ATTTGTTATAATAAATCT-AACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 | || ||||| ||| ||| ||||| || ||| | | ||||| |||| Sbjct 929220 TTCGGTGATAAT-CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACA 929162 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 || || || || || || | ||| || ||||| | ||| ||||||||||| || | Sbjct 929161 ATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATG 929102 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || || ||||| | || | ||| || | ||| || || || || ||||| || | Sbjct 929101 TAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGA 929042 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTC 33754 |||| || || || || ||||| || |||| ||| | || || |||| || || Sbjct 929041 AGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAA--TGCATCTTC 928984 Query 33755 AT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 || || ||||| | |||||| || |||||||| || | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 |||||||| | | ||| || || ||| || | ||| ||||| ||||| | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 || |||| || || || || || || || |||||||| || || ||| | || || Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 33932 GGTAATCTGCACTTCTG--TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 | || || ||||| | | ||| || || | || || || || || || |||||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCA 928746 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 || ||||| || || || | | || ||| | |||| | ||| | || | Sbjct 928745 GATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCAT----TGTCATTTAA 928690 Query 34050 -------TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 ||||| |||| | || ||| | || | ||| || | ||||||||||| Sbjct 928689 CTTGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGA 928630 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| || ||||| ||||| | |||||| || |||||| |||||| || | |||||| Sbjct 928629 AGCCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817529145520