Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 297 2e-75
seq7 91.5 1e-13
>seq3
Length=1410883
Score = 297 bits (328), Expect = 2e-75
Identities = 1124/1748 (64%), Gaps = 33/1748 (2%)
Strand=Plus/Minus
Query 36826 GTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTG 36885
||||||| || ||||| || || || | |||| |||| ||||| |||||||| |
Sbjct 803311 GTTCTCAAGTAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAG 803252
Query 36886 GTCAGTTTTGCGTATG-TAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTAT 36944
|||| || || ||| |||| | | || | || | | || || ||| || ||
Sbjct 803251 GTCAACTT-GCCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGAT 803193
Query 36945 AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGT 37004
|| ||| ||||||||||||||| || | ||| ||||| ||||||||||| || ||
Sbjct 803192 GAAAGCAGATCTGTCGGCTGCCATGTCGATGATATGCTTTTGGGATATCTCCCACACGGT 803133
Query 37005 TTTATATATTTGTTTTATATTATCTGGTAAATCTA----AATG-TTGAATAGAACCATTA 37059
||| || | |||||| | | |||||| ||| | || | ||| || ||||| |||
Sbjct 803132 TTTGTACAATTGTTTGAGCTCATCTGG--AATGTTGGGCAACGATTGGATCGAACCGTTA 803075
Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTC 37119
| | | | || |||| || || | | ||||| | | | | | | || ||
Sbjct 803074 TTTGAAATGATATTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCAAATCCTTC 803015
Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179
|| | || ||| || || | || || || |||| ||||||||||| | || || ||
Sbjct 803014 AACAAGTATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTC 802955
Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239
||| ||||| |||| | | || || || | ||| ||||| || || || |||||||||
Sbjct 802954 GAAGTGTATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGC 802895
Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCA 37299
|| || || | || | |||||||| ||||| | || | | || | |
Sbjct 802894 ATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCAATGTG 802835
Query 37300 TTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTA 37359
| ||| ||||| || || || || || | ||||| ||||| || | | ||| ||
Sbjct 802834 TCCCAGTCCCACAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTC 802775
Query 37360 CTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTA 37419
||||| || | | || ||||| || | || | | || || | || | |
Sbjct 802774 GATGCTGGGGAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTC---AATG 802718
Query 37420 GAT---TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476
||| || | || ||| || ||||| || || ||||| || || ||| | |||
Sbjct 802717 GATGCCTCCACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCT 802658
Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536
|||| |||||||| | | ||| || || |||| || | ||| || ||||||
Sbjct 802657 TCTTGAGAATCGAATGGCAACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCG 802598
Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596
| | | || ||||| ||| || | |||||||| | |||| || |||||||||||
Sbjct 802597 ACAGCAATTGGTCTGTGTCTCATGTTAGATCTCTTTGCTTCTGGAACGGGATAATAATTA 802538
Query 37597 ATATCTATTATTTTATTTAGATTTTTA---AC-----TAGTATTTTCGTAATTATTCTCA 37648
|| || ||| | || | || | || || | | |||| | || |||
Sbjct 802537 CGGTCAATGATTCTGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCA 802478
Query 37649 AC-TTGTCGAACAT--AAATA-CGTTATTATTAACAAATTTACTCAACGAAATAGATCCT 37704
| || | | | || || | | | | | |||||| | ||| || |||||| |
Sbjct 802477 AAATTATACCAGGTTGAAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCC 802418
Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTA 37764
| |||||||||||||| |||||| | ||| | |||||| ||| | |||
Sbjct 802417 AAGTTACATACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTG 802358
Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824
||| |||| | |||||||| |||| || | || || ||||| | |||||||||
Sbjct 802357 GATGATTTAATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAA 802298
Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT 37884
|| || | || || ||| ||| |||||||||| | |||| | |||||| |||||
Sbjct 802297 AGCATGAATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATAA-CTTCTG 802239
Query 37885 -GCTTTAACGATCG--CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTA 37941
|| || ||| || ||| | |||||| | |||||||| | || || | |
Sbjct 802238 AGCCTTGACGGTCTGTCTTCCACGGTTTTCTCT--TTCGTATTTTTCGTACAACTCTTCG 802181
Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001
|| |||| || || || || |||||| ||| || | | | || ||||
Sbjct 802180 AACTCATCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCAT 802121
Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA 38061
|||| || || ||||| | || ||| || |||||||| | ||| || || | ||||||
Sbjct 802120 TCTTTATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAG 802061
Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATA 38121
||| ||| ||| | |||||| || || |||||| || | | | ||||| || |||
Sbjct 802060 TCTCTGGCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATA 802001
Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181
|| || ||||||||||| || || | | | || || |||||||| | || || |||
Sbjct 802000 TCTGCATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGA 801941
Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241
| | || | | ||||||| ||| | | | | ||| || | ||||| || || |
Sbjct 801940 TCCACGTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTA 801881
Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301
||||| | |||| || || | |||| | | || |||||| || ||| || ||
Sbjct 801880 CCGTTGGTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATA 801821
Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361
||||| ||| || || || ||||| || || ||||| ||| | ||||| || ||
Sbjct 801820 CCACCAGCACTCTTGGAAATCAAAGCACACGTCTTCAACGTGTCATAGATACCGTCGATG 801761
Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421
||| ||||| || | | | || || ||||||||| || ||| || || ||
Sbjct 801760 GAGTCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCA 801701
Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481
|| || || || || || |||||| |||| || ||| |||| ||||| || || ||
Sbjct 801700 TTGAACAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTAATTGTAAGTCTCA 801641
Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541
|| || |||||| | | |||||||| | || || ||||| | || |||||
Sbjct 801640 ATAACCCGTGGGATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGA 801581
Query 38542 GGTCTTTC 38549
||||| ||
Sbjct 801580 GGTCTCTC 801573
Score = 246 bits (272), Expect = 3e-60
Identities = 586/881 (67%), Gaps = 10/881 (1%)
Strand=Plus/Minus
Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
||||||||| ||||| |||| ||| ||||| || || ||||| | | || || |
Sbjct 929448 CTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTT 929389
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
||||| || ||||||||| |||||| | || ||||| ||| || | |||
Sbjct 929388 TTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACCCAAAGCAACTAA 929329
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
|||||||||||| || ||||| | ||| ||| |||| || | | ||||||||| | |
Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269
Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577
| || || | ||| | || ||||| |||||||| || |||| || || |||| ||
Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209
Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637
| | | || ||| | |||| | | ||||| |||| ||| || |||||
Sbjct 929208 CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAA 929149
Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697
||| |||||||||||| ||||| | || | ||| ||||| ||||| | || |||||
Sbjct 929148 GTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCAT 929089
Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757
|| |||| || || | ||| || |||| |||||||||||| ||||| || |||||
Sbjct 929088 CATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTC 929029
Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCC--ATATACCTTGTTGCTAGAT-ATCCATTT 11814
||||| || || || || | | ||| || ||| | | || | | | |||||| |
Sbjct 929028 AACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATCCATCT 928969
Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874
||||| ||||| ||||| || | ||| || | || || || ||||| |||
Sbjct 928968 CAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAA-- 928911
Query 11875 CATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932
| | || | || ||| | | ||| ||||| || |||||| || |||||||
Sbjct 928910 AAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGAG 928851
Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992
|| ||||| ||||| |||||||||||||| || ||| || |||| | || ||
Sbjct 928850 TGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAACT 928791
Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052
|| | | || | || | || ||||| || |||||||||||| | ||||| ||
Sbjct 928790 TCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAAA 928731
Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCATCT 12109
|||| || | || || | |||| | | | |||| || || ||| ||||
Sbjct 928730 GCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGTCATGC 928671
Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169
|| || || || || | ||| ||| | |||||||| ||| | | || ||| |||
Sbjct 928670 AAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTTTGTAC 928611
Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|||| |||||| || ||||| | || || || | ||| ||
Sbjct 928610 ATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570
>seq7
Length=1027266
Score = 91.5 bits (100), Expect = 1e-13
Identities = 302/461 (66%), Gaps = 9/461 (2%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| |||||| | | ||||| | || ||||| ||||||
Sbjct 253131 TCGACAGTGAATTGAATAGCTCTTGATGAGGCCTGCGTTCTTAAGTAGTACATACCAGTT 253072
Query 36850 TTTAGCCCCAATCTCC-ATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908
|| | || ||||| | || || || ||| |||| |||| | ||||||||||
Sbjct 253071 TTCAAACCTC-TCTCCCAAGAATAGAAGTGGCAACTAGTCAATTTTCCAAATGTAGGATT 253013
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| | ||| || |||| ||| ||||| || ||| |||| ||||| |||||
Sbjct 253012 TTGAAGATAAATATTCATACTTTGCGACTGATCAATGAACTTCGCTCTATCGGCAGCCAT 252953
Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
||| | | ||||||| ||||||||||| || ||||| | | ||||| | |
Sbjct 252952 TTCAATCACCGTTTTTTGACTGATCTCCCAAACAGTCTTATAAAGATCTTTTAATTCCTG 252893
Query 37029 TGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACA-CAAT-TGTATTCTTTATG 37083
|| | || | | || ||||| |||||||||| ||| | |||| ||| |||| |
Sbjct 252892 AGGAATATTTTTAATATTTTGAACTGAACCATTATCTAATATCAATCTGT-TTCTCATAG 252834
Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143
|| |||||| ||| | ||| || ||| | ||||| | ||| |||| ||||
Sbjct 252833 ACA-GATTCCATATACCCAAATCTATGAGATCTTGAACTAGGTATTTATTGACAATCTGA 252775
Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203
| ||||| || | ||| | || | |||| ||| |||||| || |||| | |||
Sbjct 252774 TACTCTCCGGAGAGTACACGCCTGTTGTATAGGTTGGAAGTATAAGGCTCAAAACATTCA 252715
Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244
| | | || ||||| ||||| || |||||||| ||
Sbjct 252714 CTGAATCCGAGAATCTGAGAAGTAGAGGCTGTAGGCATGGG 252674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524747290960
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