Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 297 2e-75 seq7 91.5 1e-13 >seq3 Length=1410883 Score = 297 bits (328), Expect = 2e-75 Identities = 1124/1748 (64%), Gaps = 33/1748 (2%) Strand=Plus/Minus Query 36826 GTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTG 36885 ||||||| || ||||| || || || | |||| |||| ||||| |||||||| | Sbjct 803311 GTTCTCAAGTAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAG 803252 Query 36886 GTCAGTTTTGCGTATG-TAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTAT 36944 |||| || || ||| |||| | | || | || | | || || ||| || || Sbjct 803251 GTCAACTT-GCCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGAT 803193 Query 36945 AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGT 37004 || ||| ||||||||||||||| || | ||| ||||| ||||||||||| || || Sbjct 803192 GAAAGCAGATCTGTCGGCTGCCATGTCGATGATATGCTTTTGGGATATCTCCCACACGGT 803133 Query 37005 TTTATATATTTGTTTTATATTATCTGGTAAATCTA----AATG-TTGAATAGAACCATTA 37059 ||| || | |||||| | | |||||| ||| | || | ||| || ||||| ||| Sbjct 803132 TTTGTACAATTGTTTGAGCTCATCTGG--AATGTTGGGCAACGATTGGATCGAACCGTTA 803075 Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTC 37119 | | | | || |||| || || | | ||||| | | | | | | || || Sbjct 803074 TTTGAAATGATATTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCAAATCCTTC 803015 Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 || | || ||| || || | || || || |||| ||||||||||| | || || || Sbjct 803014 AACAAGTATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTC 802955 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| ||||| |||| | | || || || | ||| ||||| || || || ||||||||| Sbjct 802954 GAAGTGTATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGC 802895 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCA 37299 || || || | || | |||||||| ||||| | || | | || | | Sbjct 802894 ATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCAATGTG 802835 Query 37300 TTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTA 37359 | ||| ||||| || || || || || | ||||| ||||| || | | ||| || Sbjct 802834 TCCCAGTCCCACAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTC 802775 Query 37360 CTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTA 37419 ||||| || | | || ||||| || | || | | || || | || | | Sbjct 802774 GATGCTGGGGAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTC---AATG 802718 Query 37420 GAT---TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 ||| || | || ||| || ||||| || || ||||| || || ||| | ||| Sbjct 802717 GATGCCTCCACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCT 802658 Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536 |||| |||||||| | | ||| || || |||| || | ||| || |||||| Sbjct 802657 TCTTGAGAATCGAATGGCAACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCG 802598 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 | | | || ||||| ||| || | |||||||| | |||| || ||||||||||| Sbjct 802597 ACAGCAATTGGTCTGTGTCTCATGTTAGATCTCTTTGCTTCTGGAACGGGATAATAATTA 802538 Query 37597 ATATCTATTATTTTATTTAGATTTTTA---AC-----TAGTATTTTCGTAATTATTCTCA 37648 || || ||| | || | || | || || | | |||| | || ||| Sbjct 802537 CGGTCAATGATTCTGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCA 802478 Query 37649 AC-TTGTCGAACAT--AAATA-CGTTATTATTAACAAATTTACTCAACGAAATAGATCCT 37704 | || | | | || || | | | | | |||||| | ||| || |||||| | Sbjct 802477 AAATTATACCAGGTTGAAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCC 802418 Query 37705 AGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTA 37764 | |||||||||||||| |||||| | ||| | |||||| ||| | ||| Sbjct 802417 AAGTTACATACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTG 802358 Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824 ||| |||| | |||||||| |||| || | || || ||||| | ||||||||| Sbjct 802357 GATGATTTAATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAA 802298 Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT 37884 || || | || || ||| ||| |||||||||| | |||| | |||||| ||||| Sbjct 802297 AGCATGAATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATAA-CTTCTG 802239 Query 37885 -GCTTTAACGATCG--CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTA 37941 || || ||| || ||| | |||||| | |||||||| | || || | | Sbjct 802238 AGCCTTGACGGTCTGTCTTCCACGGTTTTCTCT--TTCGTATTTTTCGTACAACTCTTCG 802181 Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001 || |||| || || || || |||||| ||| || | | | || |||| Sbjct 802180 AACTCATCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCAT 802121 Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA 38061 |||| || || ||||| | || ||| || |||||||| | ||| || || | |||||| Sbjct 802120 TCTTTATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAG 802061 Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATA 38121 ||| ||| ||| | |||||| || || |||||| || | | | ||||| || ||| Sbjct 802060 TCTCTGGCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATA 802001 Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181 || || ||||||||||| || || | | | || || |||||||| | || || ||| Sbjct 802000 TCTGCATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGA 801941 Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241 | | || | | ||||||| ||| | | | | ||| || | ||||| || || | Sbjct 801940 TCCACGTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTA 801881 Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301 ||||| | |||| || || | |||| | | || |||||| || ||| || || Sbjct 801880 CCGTTGGTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATA 801821 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 ||||| ||| || || || ||||| || || ||||| ||| | ||||| || || Sbjct 801820 CCACCAGCACTCTTGGAAATCAAAGCACACGTCTTCAACGTGTCATAGATACCGTCGATG 801761 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 ||| ||||| || | | | || || ||||||||| || ||| || || || Sbjct 801760 GAGTCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCA 801701 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 || || || || || || |||||| |||| || ||| |||| ||||| || || || Sbjct 801700 TTGAACAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTAATTGTAAGTCTCA 801641 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || || |||||| | | |||||||| | || || ||||| | || ||||| Sbjct 801640 ATAACCCGTGGGATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGA 801581 Query 38542 GGTCTTTC 38549 ||||| || Sbjct 801580 GGTCTCTC 801573 Score = 246 bits (272), Expect = 3e-60 Identities = 586/881 (67%), Gaps = 10/881 (1%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||||||||| ||||| |||| ||| ||||| || || ||||| | | || || | Sbjct 929448 CTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTT 929389 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| || ||||||||| |||||| | || ||||| ||| || | ||| Sbjct 929388 TTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACCCAAAGCAACTAA 929329 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 |||||||||||| || ||||| | ||| ||| |||| || | | ||||||||| | | Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || || | ||| | || ||||| |||||||| || |||| || || |||| || Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 | | | || ||| | |||| | | ||||| |||| ||| || ||||| Sbjct 929208 CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAA 929149 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||| |||||||||||| ||||| | || | ||| ||||| ||||| | || ||||| Sbjct 929148 GTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCAT 929089 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 || |||| || || | ||| || |||| |||||||||||| ||||| || ||||| Sbjct 929088 CATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTC 929029 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCC--ATATACCTTGTTGCTAGAT-ATCCATTT 11814 ||||| || || || || | | ||| || ||| | | || | | | |||||| | Sbjct 929028 AACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATCCATCT 928969 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 ||||| ||||| ||||| || | ||| || | || || || ||||| ||| Sbjct 928968 CAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAA-- 928911 Query 11875 CATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | | || | || ||| | | ||| ||||| || |||||| || ||||||| Sbjct 928910 AAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGAG 928851 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || ||||| ||||| |||||||||||||| || ||| || |||| | || || Sbjct 928850 TGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAACT 928791 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | | || | || | || ||||| || |||||||||||| | ||||| || Sbjct 928790 TCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAAA 928731 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCATCT 12109 |||| || | || || | |||| | | | |||| || || ||| |||| Sbjct 928730 GCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGTCATGC 928671 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 || || || || || | ||| ||| | |||||||| ||| | | || ||| ||| Sbjct 928670 AAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTTTGTAC 928611 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||| |||||| || ||||| | || || || | ||| || Sbjct 928610 ATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 >seq7 Length=1027266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 302/461 (66%), Gaps = 9/461 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| |||||| | | ||||| | || ||||| |||||| Sbjct 253131 TCGACAGTGAATTGAATAGCTCTTGATGAGGCCTGCGTTCTTAAGTAGTACATACCAGTT 253072 Query 36850 TTTAGCCCCAATCTCC-ATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATT 36908 || | || ||||| | || || || ||| |||| |||| | |||||||||| Sbjct 253071 TTCAAACCTC-TCTCCCAAGAATAGAAGTGGCAACTAGTCAATTTTCCAAATGTAGGATT 253013 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | | ||| || |||| ||| ||||| || ||| |||| ||||| ||||| Sbjct 253012 TTGAAGATAAATATTCATACTTTGCGACTGATCAATGAACTTCGCTCTATCGGCAGCCAT 252953 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 ||| | | ||||||| ||||||||||| || ||||| | | ||||| | | Sbjct 252952 TTCAATCACCGTTTTTTGACTGATCTCCCAAACAGTCTTATAAAGATCTTTTAATTCCTG 252893 Query 37029 TGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACA-CAAT-TGTATTCTTTATG 37083 || | || | | || ||||| |||||||||| ||| | |||| ||| |||| | Sbjct 252892 AGGAATATTTTTAATATTTTGAACTGAACCATTATCTAATATCAATCTGT-TTCTCATAG 252834 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || |||||| ||| | ||| || ||| | ||||| | ||| |||| |||| Sbjct 252833 ACA-GATTCCATATACCCAAATCTATGAGATCTTGAACTAGGTATTTATTGACAATCTGA 252775 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 | ||||| || | ||| | || | |||| ||| |||||| || |||| | ||| Sbjct 252774 TACTCTCCGGAGAGTACACGCCTGTTGTATAGGTTGGAAGTATAAGGCTCAAAACATTCA 252715 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGG 37244 | | | || ||||| ||||| || |||||||| || Sbjct 252714 CTGAATCCGAGAATCTGAGAAGTAGAGGCTGTAGGCATGGG 252674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524747290960