Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 324 2e-83 >seq3 Length=1410883 Score = 324 bits (358), Expect = 2e-83 Identities = 892/1349 (66%), Gaps = 36/1349 (3%) Strand=Plus/Minus Query 79429 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAA 79488 || || || || |||| ||||| ||||| | | | || ||||| |||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 79489 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC---TG 79545 | | |||||||||| |||||||||||| || || ||| | || | || | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 79546 ACTA--TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC--------GTC-CAT 79594 || |||||| | ||| | ||||| ||||| | | | || ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 79595 CTATT---ACAAA--CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 | | ||||| || | ||| | | |||||||| ||||| || || ||||||| Sbjct 802452 CACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACATACAGCAACCTCATC 802395 Query 79650 AGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATT 79709 | | | | |||| | || || || | || | ||||| | || ||||| Sbjct 802394 TGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATT 802335 Query 79710 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTC 79769 | ||| ||| |||| |||||||| ||||| |||||||| ||||| |||||||| || || Sbjct 802334 CTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTC 802275 Query 79770 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATA-GACTTGTAT 79827 | |||| |||| || || | ||| | | || ||||||| | | | ||| | Sbjct 802274 TGTTTGAGCCTCTAAGATAGCATACCATAACTTCT-GAGCCTTGACGGTCTGTCTTCCA- 802217 Query 79828 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 | |||||||||||||||| | || || ||||||||| || || | || | Sbjct 802216 CGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAATTTGTCAGCC 802157 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTC 79947 || || ||| ||| | || | | ||| | ||| ||| || | || ||||| |||| Sbjct 802156 AAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTACTCTTTTC 802097 Query 79948 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 80007 || || | |||||| ||||| | |||| ||||| ||||||| ||| | || || || Sbjct 802096 ATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCTTCCTTA 802037 Query 80008 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 80067 || |||||| ||| || | ||| | | |||||| | |||||| ||||| | ||| Sbjct 802036 CCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTAC 801977 Query 80068 ATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 80127 | || | | || |||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 801976 AAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTGTTGTTA 801917 Query 80128 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 80187 | || | | ||| ||||||||||| ||||| ||||| ||||| |||| || ||| Sbjct 801916 AAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCA 801857 Query 80188 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 || | | |||||||||| || | ||| || || || || | || || || || Sbjct 801856 CCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAA 801797 Query 80248 GCGCATCGT-TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || || ||| || ||||| |||||||| || || ||| || || ||||| || | Sbjct 801796 GCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCAACCAA 801738 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || ||||||||| | | || || ||||| || ||||| || ||||| || Sbjct 801737 GAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAAGCATG 801678 Query 80367 CGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 || || || ||| ||||| ||| |||||| ||||||||| | | ||||| | Sbjct 801677 TGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGGATATCATCTC 801619 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 |||||| || | || || | ||| | || ||| |||||||| || | | ||| | Sbjct 801618 TATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCAACCTTACCGT 801559 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | ||||| ||||||||| | || || || || ||||| || |||||||| |||| Sbjct 801558 CAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTGTAGTTGAAGT 801499 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 80605 | || ||| ||| |||| | ||||| | | ||| || | ||| | ||| || Sbjct 801498 CGCGATCGAAAACAATAGCAGAGTTCAACTCATCAGCATTGGCTTGAACAATATCGTAGG 801439 Query 80606 TGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 80664 | | ||| || || || |||||||| || | || || || | ||| | | | || Sbjct 801438 T-CTCCTTGGAGATCATGGGAGAATGCAGGTCAGTCTTTGGGTTGATATACTCGTACAAC 801380 Query 80665 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 80724 | || ||||| ||| | || |||||| ||| || | || || ||||| ||| Sbjct 801379 TGCTTACACACTTGTGAAAACTGCTTGATTGTTTGCTTATGCAAGTTGGAAACGGCAATT 801320 Query 80725 CTGGCGGCTAAAATGGCATAATCTGGATG 80753 ||||| || ||||| || || ||||| || Sbjct 801319 CTGGCTGCCAAAATAGCGTAGTCTGGGTG 801291 Score = 210 bits (232), Expect = 3e-49 Identities = 591/896 (66%), Gaps = 16/896 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||| ||||| ||||| || |||| || | ||||| ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 ||| || || ||||||||||||||||| ||||| |||||||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 ||| || | |||||||| || |||||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || | | || || | || | || | |||||| | |||||||| || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 49896 ATCTGTTATAATAGATCT-AACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 || || ||||| ||| ||| ||||| || ||| | ||||| |||| Sbjct 929220 TTCGGTGATAAT-CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACA 929162 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 || || || || || || | ||| || ||||| | ||| | |||||| || || | Sbjct 929161 ATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATG 929102 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || || ||||| | || | ||| || | ||| || || || |||||||| ||| | Sbjct 929101 TAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGA 929042 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACTGGCGCTGTC 50132 |||| || || || || || || || |||||||| | || || |||| || || || Sbjct 929041 AGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAA-TGCATCT-TC 928984 Query 50133 AT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 || || ||||| | |||||| || |||||||| || | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 |||||||| | | ||| || || ||| || | ||| ||||| ||||| | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 || |||| || || || || || || || |||||||| || || ||| | || || Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 50310 GGTAATCTGCACTTCTG--TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 | || || ||||| | | ||| || ||| | || || || || || || || ||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCA 928746 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT- 50426 || ||||| || || || | | || ||| |||| ||| ||| || Sbjct 928745 GATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTG 928686 Query 50427 --ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 ||||| |||| | || ||| | || | ||| || | ||||||||||| ||| Sbjct 928685 TCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCC 928626 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || || ||||| ||||| | |||||| || |||||| |||||| || | |||||| Sbjct 928625 TCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268719194760